# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8784572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.10u 0.01s 00:00:00.11 Elapsed: 00:00:00.08 # Mc/sec: 4392.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8784572 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.06s 00:00:00.61 Elapsed: 00:00:00.21 # Mc/sec: 17610.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8784572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.09u 0.01s 00:00:00.10 Elapsed: 00:00:00.08 # Mc/sec: 2854.99 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8784572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.55u 0.01s 00:00:00.56 Elapsed: 00:00:00.16 # Mc/sec: 19326.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8784572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.07 # Mc/sec: 13176.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.4e-24 73.9 0.0 3.4e-22 68.0 0.0 3.0 1 frame_4 3.3e-17 51.8 0.0 5.2e-17 51.1 0.0 1.3 1 frame_1 2.5e-09 26.1 0.0 4.4e-09 25.3 0.0 1.4 1 frame_6 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.0 0.0 1.7e-22 3.4e-22 1 168 [] 1042507 1042645 .. 1042507 1042645 .. 0.90 >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.1 0.0 2.6e-17 5.2e-17 2 168 .] 1336767 1336929 .. 1336766 1336929 .. 0.89 >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.3 0.0 2.2e-09 4.4e-09 5 168 .] 1070942 1071082 .. 1070938 1071082 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8784572 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 3 (0.5); expected 0.1 (0.02) Passed Vit filter: 3 (0.5); expected 0.0 (0.001) Passed Fwd filter: 3 (0.5); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 4.18u 0.08s 00:00:04.26 Elapsed: 00:00:01.45 # Mc/sec: 1017.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-32 101.2 15.8 2e-32 101.2 15.8 15.8 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 101.2 15.8 3.3e-33 2e-32 1 155 [. 1181881 1182059 .. 1181881 1182060 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8784572 residues searched) Passed MSV filter: 4 (0.666667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.59u 0.06s 00:00:01.65 Elapsed: 00:00:01.25 # Mc/sec: 1096.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8784572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.15u 0.02s 00:00:00.17 Elapsed: 00:00:00.09 # Mc/sec: 12396.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1179.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1176.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1175.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NC_0151601.0.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (689792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 12140.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (689792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 9680.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (689792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4380.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (689792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1793.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (689792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11588.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (689792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (689792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7242.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033681.9.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (689792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2759.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 900.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1077.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000561.99.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (389990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 13727.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (389990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (389990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4094.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (389990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1559.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (389990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 8209.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (389990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4952.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (389990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6551.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000061.999.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (389990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6083.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (148196 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (148196 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2311.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (148196 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1882.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (148196 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (148196 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (148196 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (148196 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000191.1000.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (148196 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (99306 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 397.22 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (99306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (99306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 258.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (99306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4180.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (99306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (99306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3495.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (99306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000271.1001.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (99306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (810672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 9511.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (810672 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 4215.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (810672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 13619.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (810672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8512.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (810672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2107.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (810672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10295.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (810672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3242.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000011.1002.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (810672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 34129.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (71932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 287.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (71932 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 757.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (71932 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2532.01 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (71932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (71932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 187.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (71932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (71932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000351.1003.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (71932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (30280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (30280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (30280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (30280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (30280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (30280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (30280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000501.1004.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (30280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (150542 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2348.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (150542 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1911.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (150542 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (150542 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (150542 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6337.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (150542 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1580.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (150542 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000171.1005.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (150542 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5299.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 40.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000561.1006.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (149358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (149358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6287.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (149358 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2509.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (149358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1896.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (149358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (149358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1568.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (149358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000181.1007.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (149358 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (50240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (50240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 130.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (50240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2115.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (50240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (50240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (50240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (50240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000431.1008.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (50240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 725.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000571.100.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (109010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4589.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (109010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (109010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (109010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1384.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (109010 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (109010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (109010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000241.1009.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (109010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (228378 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3562.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (228378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9614.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (228378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (228378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 593.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (228378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (228378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (228378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2397.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000111.1010.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (228378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 547.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 368.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1235.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000481.1011.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 445.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 288.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 180.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 68.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000541.1012.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (76820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (76820 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (76820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (76820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (76820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (76820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3234.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (76820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000341.1013.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (76820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 806.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (61304 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 643.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (61304 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (61304 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2580.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (61304 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (61304 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (61304 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (61304 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 778.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000361.1014.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (61304 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (54626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (54626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1922.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (54626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (54626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (54626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 852.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (54626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 917.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (54626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000381.1015.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (54626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (54600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2298.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (54600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (54600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (54600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 851.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (54600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (54600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (54600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000391.1016.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (54600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (98358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (98358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (98358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1249.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (98358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (98358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (98358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (98358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000281.1017.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (98358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (125330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1315.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (125330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1591.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (125330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (125330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (125330 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (125330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (125330 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4411.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000221.1018.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (125330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5276.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (395234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1580.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (395234 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 2509.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (395234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 13912.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (395234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4149.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (395234 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6165.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (395234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 8319.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (395234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000021.101.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (395234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (46680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 784.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (46680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (46680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (46680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (46680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (46680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (46680 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000441.1019.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (46680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1643.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (85174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (85174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (85174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (85174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (85174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (85174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (85174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000311.1020.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (85174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 168.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 127.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000571.1021.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10044 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (138682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1761.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (138682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (138682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (138682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (138682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (138682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (138682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000201.1022.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (138682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (809786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 28504.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (809786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 1619.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (809786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6316.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (809786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10284.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (809786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 6802.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (809786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8502.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (809786 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.08 # Mc/sec: 4261.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000021.1023.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (809786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2105.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (51898 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1826.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (51898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 134.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (51898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2184.91 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.3e-35 108.9 17.5 1.8e-34 107.8 17.5 1.5 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 107.8 17.5 3e-35 1.8e-34 2 155 .. 4856 5033 .. 4854 5034 .. 0.90 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (51898 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 809.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (51898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (51898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (51898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 659.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (51898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000411.1024.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (41930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (41930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (41930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (41930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 109.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (41930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (41930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (41930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000461.1025.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (41930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 800.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 957.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000511.1026.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22734 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (88946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3744.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (88946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (88946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1129.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (88946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 355.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (88946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (88946 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1387.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (88946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3130.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000301.1027.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (88946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 309.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 73.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 649.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000531.1028.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (68564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (68564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (68564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1069.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (68564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (68564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 719.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (68564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (68564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000391.102.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (68564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2886.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (79112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1004.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (79112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (79112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (79112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 830.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (79112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2784.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (79112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (79112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1329.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000331.1029.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (79112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3330.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (656760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8340.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (656760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6895.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (656760 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5122.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (656760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 9216.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (656760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2627.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (656760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 23117.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (656760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1707.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-38 120.8 0.8 4.6e-20 61.1 0.2 3.2 2 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.1 0.2 7.6e-21 4.6e-20 1 168 [] 23626 23768 .. 23626 23768 .. 0.87 2 ! 53.5 0.0 1.6e-18 9.8e-18 2 167 .. 81677 81845 .. 81676 81846 .. 0.95 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (656760 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.15 # Mc/sec: 735.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000041.1030.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (381504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 16061.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (381504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1526.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (381504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4005.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (381504 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5951.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (381504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4845.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (381504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (381504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13428.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000071.1031.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (381504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (84048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 218.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (84048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3538.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (84048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (84048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (84048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2958.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (84048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (84048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000321.1032.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (84048 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1311.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 634.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18036 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 759.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001801.1033.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 180.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 222.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 239.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002311.1034.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 501.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19774 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19774 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001581.1035.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 180.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10756 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003101.1036.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 136.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8556 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8556 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 89.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8556 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8556 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8556 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8556 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8556 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 143.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003571.1037.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8556 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 51.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19954 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 253.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19954 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 79.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001551.1038.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (120044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5053.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (120044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2016.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (120044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4225.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (120044 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1872.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (120044 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 480.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (120044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1260.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (120044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000271.103.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (120044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (38582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (38582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (38582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (38582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 648.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (38582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (38582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (38582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000411.1039.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (38582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 489.99 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6962 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6962 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6962 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6962 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6962 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6962 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 293.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6962 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004041.1040.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6962 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7276 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7276 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 256.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7276 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7276 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7276 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7276 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 18.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7276 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003901.1041.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7276 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 76.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 306.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 76.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003891.1042.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11674 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 46.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11674 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11674 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11674 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11674 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11674 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11674 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 410.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002801.1043.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11674 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 95.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 141.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9082 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003451.1044.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 319.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 947.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 341.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001021.1045.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (32098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (32098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (32098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (32098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (32098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (32098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (32098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000621.1046.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (32098 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1129.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1125.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 941.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 69.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001041.1047.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000811.1048.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29588 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1335.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 494.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000531.104.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 533.00 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002651.1049.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (38854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (38854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 493.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (38854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (38854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (38854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (38854 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (38854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 652.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000391.1050.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (38854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 407.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24454 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24454 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24454 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24454 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24454 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 410.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24454 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24454 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001141.1051.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24454 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 381.48 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19936 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19936 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19936 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19936 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19936 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19936 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19936 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001561.1052.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19936 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 500.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29818 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000781.1053.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24720 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001121.1054.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6872 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 107.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 17.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004071.1055.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (52494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 666.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (52494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (52494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1847.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (52494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (52494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (52494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (52494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000151.1056.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (52494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7530 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 317.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003811.1057.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 109.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004001.1058.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (185002 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3256.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (185002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2349.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (185002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (185002 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7788.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (185002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2886.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (185002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (185002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000191.105.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (185002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1942.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8550 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 22.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8550 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 300.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8550 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8550 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 143.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8550 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8550 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8550 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 133.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003581.1059.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8550 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 292.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1171.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000931.1060.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31402 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000681.1061.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1105.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15372 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 647.16 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15372 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 61.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15372 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15372 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15372 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15372 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15372 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 161.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002161.1062.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15372 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 68.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004151.1063.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6484 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 378.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 167.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 112.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003111.1064.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 971.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 430.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000951.1065.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004141.1066.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10978 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003041.1067.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10978 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 462.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (28600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (28600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (28600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (28600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1006.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (28600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (28600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (28600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000901.1068.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (28600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (355896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 14983.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (355896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (355896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4519.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (355896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5979.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (355896 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5551.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (355896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12527.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (355896 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1423.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000051.106.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (355896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3736.91 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 50.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 32.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002611.1069.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21090 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 742.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001431.1070.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 124.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 281.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 31.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003701.1071.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6648 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 279.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 103.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 234.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004101.1072.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31910 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1343.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 127.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000631.1073.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8104 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 126.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003691.1074.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8216 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 21.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003661.1075.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 28.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10870 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 457.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003061.1076.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10870 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 261.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004221.1077.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8790 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8790 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8790 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8790 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8790 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8790 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 92.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8790 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003481.1078.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8790 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 137.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (107970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4545.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (107970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (107970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (107970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1684.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (107970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1813.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (107970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (107970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3800.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000311.107.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (107970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 51.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 217.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12972 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 136.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12972 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002541.1079.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 546.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9136 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 23.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 384.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003441.1080.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 25.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 351.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 126.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003251.1081.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 167.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 459.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000821.1082.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1037.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17778 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 186.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17778 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17778 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 625.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001851.1083.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 39.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15218 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 193.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002181.1084.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 707.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20104 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 846.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 211.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20104 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001541.1085.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 90.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003951.1086.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18950 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-26 80.9 0.0 4.7e-26 80.6 0.0 1.1 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.6 0.0 7.8e-27 4.7e-26 2 168 .] 2960 3127 .. 2959 3127 .. 0.90 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18950 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 318.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 797.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (18944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (18944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001691.1087.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (18944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 545.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 269.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001441.1088.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (321096 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3371.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (321096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11302.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (321096 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 2504.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (321096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (321096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (321096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13518.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (321096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4077.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-25 79.2 0.0 1.2e-23 72.7 0.0 2.3 1 frame_2 2.8e-18 55.3 0.1 3.8e-18 54.8 0.1 1.2 1 frame_4 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.7 0.0 4e-24 1.2e-23 1 168 [] 50242 50380 .. 50242 50380 .. 0.90 >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.8 0.1 1.3e-18 3.8e-18 2 167 .. 2828 2996 .. 2827 2997 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (321096 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 2 (0.333333); expected 0.0 (0.001) Passed Fwd filter: 2 (0.333333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.12 # Mc/sec: 449.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (37968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (37968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1222.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (37968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (39642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (39642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1276.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000071.108.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (39642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 30.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 181.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 195.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 122.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002821.1089.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 21.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003681.1090.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20864 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 325.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20864 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 878.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 734.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001451.1091.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002301.1092.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 218.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20276 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20276 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20276 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 713.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20276 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20276 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20276 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20276 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 81.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001521.1093.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20276 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 212.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003211.1094.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10202 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (32536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (32536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (32536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (32536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 130.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (32536 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (32536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (32536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000611.1095.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (32536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 41.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10350 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 26.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10350 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 161.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003141.1096.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 364.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (28816 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 449.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (28816 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (28816 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (28816 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1014.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (28816 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (28816 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (28816 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000871.1097.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (28816 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (30606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (30606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (30606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (30606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (30606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (30606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1288.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (30606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000721.1098.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (30606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (285054 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4446.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (285054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2993.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (285054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (285054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10033.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (285054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (285054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (285054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12000.77 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033741.10.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (285054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1140.22 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (55428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (55428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (55428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (55428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (55428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (55428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (55428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 864.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000441.109.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (55428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 225.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17750 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 276.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001861.1099.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001181.1100.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11746 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002791.1101.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 30.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (39166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (39166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (39166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 497.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (39166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (39166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1378.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (39166 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (39166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000371.1102.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (39166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1238.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000521.1103.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21798 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 767.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21798 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 276.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001361.1104.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21798 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 499.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000791.1105.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 311.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (38374 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1615.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (38374 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 644.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (38374 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 99.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (38374 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (38374 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (38374 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (38374 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000431.1106.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (38374 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 153.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10806 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 168.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10806 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 380.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10806 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 113.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10806 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10806 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10806 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10806 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003081.1107.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10806 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (43560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 457.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (43560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (43560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (43560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (43560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (43560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (43560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000281.1108.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (43560 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 22.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000641.110.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6818 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004091.1109.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 100.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 108.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004171.1110.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (80914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (80914 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (80914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1359.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (80914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (80914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2848.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (80914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (80914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3406.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000041.1111.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (80914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 56.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002321.1112.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14242 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 222.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 167.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003241.1113.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 598.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002351.1114.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7244 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7244 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7244 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 254.99 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7244 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7244 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7244 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7244 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003911.1115.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7244 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 521.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 49.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002641.1116.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12390 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 443.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003121.1117.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 317.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20324 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 52.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001501.1118.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 81.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (311322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5230.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (311322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 809.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (311322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1245.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (311322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3953.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (311322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13106.66 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (311322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3268.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (311322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10958.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000091.111.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (311322 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4856.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1806.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 720.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42902 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000291.1119.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 214.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 67.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002011.1120.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 593.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 143.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 576.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002411.1121.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 631.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 227.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 279.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17948 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 755.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001831.1122.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 179.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001991.1123.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17140 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 146.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 368.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003491.1124.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 171.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003031.1125.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11478 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11478 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11478 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11478 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11478 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11478 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11478 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 404.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002841.1126.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11478 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1088.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25852 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 403.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 271.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 328.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001091.1127.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 208.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 140.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 224.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002461.1128.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13384 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 442.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000631.112.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 42.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001721.1129.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23116 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 813.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001251.1130.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 249.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 329.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 826.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19628 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 306.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19628 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001601.1131.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000921.1132.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1107.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 528.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1324.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000671.1133.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7340 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003881.1134.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 77.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001681.1135.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (66330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (66330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (66330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (66330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (66330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (66330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (66330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000101.1136.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (66330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 106.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 88.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 295.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 353.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 33.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003631.1137.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1053.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 77.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000761.1138.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (174862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6155.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (174862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2937.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (174862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (174862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 454.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (174862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 699.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (174862 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2727.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (174862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000231.113.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (174862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7361.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 397.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 119.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9446 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 158.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 24.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003351.1139.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (38594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (38594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1624.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (38594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (38594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 100.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (38594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (38594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (38594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 490.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000421.1140.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (38594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12286 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 129.00 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002661.1141.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12286 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 432.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 184.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 610.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002291.1142.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 97.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003411.1143.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13896 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 585.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002391.1144.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001291.1145.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 42.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 169.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 64.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002051.1146.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 118.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1245.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000801.1147.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 76.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (45920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (45920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (45920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (45920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (45920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (45920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (45920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 583.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000251.1148.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (45920 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 716.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (169590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (169590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (169590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (169590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (169590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (169590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2645.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (169590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5969.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000241.114.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (169590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7139.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (39632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1668.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (39632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (39632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (39632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (39632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (39632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (39632 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000361.1149.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (39632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (28874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (28874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1016.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (28874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (28874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (28874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (28874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (28874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 450.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000861.1150.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (28874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 115.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17218 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 606.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17218 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 268.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 289.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001971.1151.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-07 16.8 0.0 1.1e-06 16.2 0.0 1.1 0 frame_1 Domain annotation for each sequence: >> frame_1 [No individual domains that satisfy reporting thresholds (although complete target did)] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20120 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 423.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 708.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 338.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001531.1152.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 136.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 286.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 127.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8144 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 342.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003671.1153.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (32546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (32546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (32546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1145.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (32546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (32546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (32546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1370.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (32546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000601.1154.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (32546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 84.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003991.1155.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 344.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 70.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1141.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000991.1156.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7694 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7694 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7694 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7694 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7694 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7694 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 323.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7694 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 129.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003771.1157.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7694 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (33232 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1399.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (33232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (33232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (33232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (33232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 558.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (33232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (33232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000561.1158.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (33232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (118298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4164.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (118298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (118298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (118298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 473.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (118298 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1845.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (118298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (118298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000291.115.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (118298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1502.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 391.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23330 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001231.1159.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 93.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12100 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002711.1160.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29844 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 119.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000771.1161.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1103.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1319.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31342 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 488.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000691.1162.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (113848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1912.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (113848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (113848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (113848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (113848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4007.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (113848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1445.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (113848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4793.00 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000031.1163.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (113848 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1776.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 400.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23832 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 302.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001201.1164.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23832 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (47318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (47318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 189.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (47318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (47318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (47318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1665.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (47318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1992.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (47318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000231.1165.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (47318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10342 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 131.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 161.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003151.1166.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002701.1167.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 131.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10338 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003161.1168.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (50630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 131.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (50630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (50630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (50630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (50630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2131.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (50630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (50630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 202.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000461.116.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (50630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1782.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 222.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 70.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 737.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001911.1169.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7772 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003751.1170.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 77.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 50.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001631.1171.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001901.1172.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11244 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 395.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11244 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11244 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11244 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 175.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11244 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11244 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 44.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11244 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002891.1173.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11244 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 473.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 153.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 124.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 345.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003281.1174.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (69778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 279.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (69778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (69778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (69778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (69778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2937.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (69778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (69778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000081.1175.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (69778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (50882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (50882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-27 85.0 0.1 6.7e-25 76.8 0.1 2.2 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 76.8 0.1 1.1e-25 6.7e-25 1 168 [] 2614 2752 .. 2614 2752 .. 0.91 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (50882 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 427.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (50882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 646.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (50882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 534.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (50882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (50882 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (50882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2142.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (36504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (36504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000171.1176.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (36504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1175.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (40226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (40226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (40226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (40226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1693.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (40226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (40226 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (40226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 510.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000331.1177.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (40226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 70.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 184.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 294.77 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001891.1178.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (64698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1009.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (64698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (64698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 821.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (64698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 168.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (64698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (64698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (64698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000411.117.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (64698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 258.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 362.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003191.1179.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22712 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 354.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22712 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 381.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001281.1180.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 288.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 968.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1158.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 462.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000961.1181.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 44.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 115.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002991.1182.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11036 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15162 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 192.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 254.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002191.1183.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 236.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 182.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003071.1184.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 300.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003591.1185.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7218 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 91.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7218 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 112.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7218 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 254.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003921.1186.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 80.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7660 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 269.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003801.1187.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 30.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 235.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001311.1188.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10580 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000621.118.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 302.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23850 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 95.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001191.1189.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 69.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17452 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 272.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001931.1190.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 134.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12850 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 540.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 33.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002561.1191.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 767.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 918.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 56.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001351.1192.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 64.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004241.1193.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 278.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 17.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004121.1194.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 233.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 438.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 524.99 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 32.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002621.1195.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17590 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 619.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001881.1196.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17590 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (123818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (123818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1300.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (123818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (123818 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (123818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 495.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (123818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (123818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2080.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000011.1197.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (123818 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5212.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 39.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002201.1198.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (851344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 1702.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (851344 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 4426.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (851344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 14983.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (851344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 4469.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (851344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5406.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (851344 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.04 # Mc/sec: 8960.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (851344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2213.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033671.11.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (851344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 7151.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (75882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (75882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1274.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (75882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3194.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (75882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1183.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (75882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (75882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (75882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 303.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000361.119.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (75882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2671.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 195.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 159.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 131.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002601.1199.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 77.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7342 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 123.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7342 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003871.1200.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 488.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29104 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000851.1201.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 272.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 325.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003761.1202.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 421.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 674.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 160.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000351.1203.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 121.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 75.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7208 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003931.1204.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26194 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26194 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26194 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26194 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26194 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 440.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26194 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26194 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001061.1205.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26194 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15496 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 162.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 260.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 196.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002141.1206.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (30128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (30128 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (30128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (30128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (30128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (30128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1268.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (30128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 506.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000741.1207.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (30128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 86.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6834 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 287.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 27.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 71.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004081.1208.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (38058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 98.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (38058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1602.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (38058 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (38058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (38058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (38058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (38058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000501.120.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (38058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1339.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 228.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 72.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 46.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001821.1209.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 339.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 101.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 161.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 150.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003331.1210.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 38.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (50856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 645.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (50856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (50856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1790.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (50856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (50856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (50856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 854.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (50856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 203.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000181.1211.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (50856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2141.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 132.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 89.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 356.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 107.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 142.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8476 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003611.1212.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 364.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 821.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 296.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001221.1213.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 933.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 345.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22162 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 232.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001321.1214.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 279.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003711.1215.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 236.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 592.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002381.1216.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 115.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 172.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003011.1217.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (30902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (30902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (30902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (30902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 482.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (30902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (30902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (30902 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000701.1218.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (30902 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 123.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (308960 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1235.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (308960 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5190.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (308960 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 6503.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (308960 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10875.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (308960 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (308960 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 803.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (308960 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4819.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000101.121.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (308960 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3923.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (50990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 132.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (50990 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1794.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (50990 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (50990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (50990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (50990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (50990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2146.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000161.1219.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (50990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 38.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 25.23 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003321.1220.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11092 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 466.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 116.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002961.1221.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 247.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 187.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14756 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 154.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002251.1222.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 390.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 295.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001241.1223.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15714 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 553.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 165.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002121.1224.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (30724 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 122.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (30724 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (30724 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (30724 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (30724 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (30724 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (30724 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000711.1225.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (30724 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 179.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14100 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14100 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 56.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002361.1226.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 593.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 191.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18216 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18216 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 766.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 641.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001761.1227.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 156.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14896 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002221.1228.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (105082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3698.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (105082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (105082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4423.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (105082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 420.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-34 108.6 15.8 2.2e-34 107.5 15.8 1.5 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 107.5 15.8 3.6e-35 2.2e-34 1 155 [. 3680 3858 .. 3680 3859 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (105082 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 819.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (105082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (105082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1765.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (105082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000321.122.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 143.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 139.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 35.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003461.1229.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11848 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 184.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 199.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002771.1230.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8282 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8282 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 348.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8282 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 105.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8282 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8282 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8282 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8282 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003641.1231.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8282 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6942 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6942 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 108.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004051.1232.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (75664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (75664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (75664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (75664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2663.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (75664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (75664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (75664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 960.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000051.1233.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (75664 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 240.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 796.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001701.1234.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 665.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 856.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 716.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20356 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001491.1235.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20356 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 119.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 80.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 19.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003791.1236.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 270.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21510 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21510 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 361.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21510 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001391.1237.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9334 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 392.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9334 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 156.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9334 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 145.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9334 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9334 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9334 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9334 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 24.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003401.1238.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9334 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 118.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (181006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (181006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2823.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (181006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (181006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6371.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (181006 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7620.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (181006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1900.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (181006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 470.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000221.123.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (181006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3040.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (38898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (38898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 494.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (38898 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (38898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 101.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (38898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (38898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (38898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 653.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000381.1239.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (38898 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1342.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000651.1240.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002081.1241.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 569.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 64.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002061.1242.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12736 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 536.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002581.1243.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 71.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 279.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001841.1244.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (47668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (47668 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 743.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (47668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 800.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (47668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (47668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 190.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (47668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2006.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (47668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000221.1245.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (47668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 500.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 550.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 91.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 370.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1486.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000491.1246.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1521.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36134 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 458.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 607.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 563.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000451.1247.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 379.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 239.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 500.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 149.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002331.1248.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (68056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2395.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (68056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (68056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2865.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (68056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (68056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 176.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (68056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1143.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (68056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 272.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000401.124.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (68056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1061.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 431.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 71.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1164.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000941.1249.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 464.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 61.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 39.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002171.1250.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 239.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 29.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11348 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 399.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 190.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002881.1251.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (69206 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (69206 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 878.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (69206 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (69206 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (69206 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (69206 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (69206 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000091.1252.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (69206 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 427.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002681.1253.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (70426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 183.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (70426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (70426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (70426 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1098.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (70426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (70426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1183.16 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (70426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 894.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000071.1254.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (70426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 739.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 98.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9394 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 157.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9394 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 330.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003371.1255.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 37.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9414 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003361.1256.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9974 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 155.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 419.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 126.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 351.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 104.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 167.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003261.1257.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36166 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1273.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000461.1258.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 38.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14912 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 232.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 156.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 524.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000591.125.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8242 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 138.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 290.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 21.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003651.1259.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1131.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 107.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26872 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001031.1260.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7680 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 129.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 323.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003781.1261.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 88.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 231.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22072 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001331.1262.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 69.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17482 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 293.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001921.1263.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 158.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 209.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 130.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 32.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 438.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002631.1264.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25530 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 398.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1074.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 102.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25530 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001111.1265.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14218 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 149.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002341.1266.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 180.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13708 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 230.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13708 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13708 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13708 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13708 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13708 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 54.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13708 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 577.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002401.1267.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13708 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 482.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 69.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004281.1268.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (285782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3000.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (285782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 12031.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (285782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3629.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (285782 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 2229.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (285782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5029.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (285782 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 743.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (285782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1143.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000131.126.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (285782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4801.14 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 234.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001731.1269.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 384.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 142.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 36.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 95.99 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003431.1270.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (33986 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (33986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (33986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 431.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (33986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (33986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (33986 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (33986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000541.1271.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (33986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 966.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000981.1272.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 461.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 770.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001341.1273.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 464.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003021.1274.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 48.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 505.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002741.1275.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 201.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (44580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (44580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (44580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (44580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1876.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (44580 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (44580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (44580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000271.1276.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (44580 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17156 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 217.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17156 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17156 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17156 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17156 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17156 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17156 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001981.1277.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17156 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 334.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1121.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1341.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 497.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000661.1278.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (204996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (204996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3197.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (204996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (204996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 819.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (204996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2152.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (204996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 532.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (204996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 8630.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000171.127.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (204996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2603.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 100.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 31.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 20.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003721.1279.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 132.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18278 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 232.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-15 45.0 0.0 2.3e-10 29.5 0.0 2.2 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.5 0.0 3.9e-11 2.3e-10 120 168 .] 2183 2231 .. 2177 2231 .. 0.96 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18278 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 307.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 47.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18278 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (18272 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (18272 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 588.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001751.1280.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (18272 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29456 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1036.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 117.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000831.1281.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 272.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 45.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001941.1282.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 613.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1016.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24134 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 376.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001161.1283.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11202 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 174.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002871.1284.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 117.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 73.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 245.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6964 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004031.1285.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 120.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003341.1286.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25702 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25702 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25702 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25702 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25702 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 66.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25702 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25702 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001101.1287.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25702 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 102.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 45.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001871.1288.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (102236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1594.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (102236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3598.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (102236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4304.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (102236 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 408.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (102236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (102236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (102236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1717.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000341.128.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (102236 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7152 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7152 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 75.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003941.1289.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 301.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 676.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 204.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002091.1290.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16080 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 68.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 272.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 101.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004161.1291.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 108.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10076 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10076 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 26.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10076 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10076 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10076 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10076 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10076 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003221.1292.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10076 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 123.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 114.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003851.1293.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 107.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 81.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 16.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 67.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-06 15.3 0.0 3e-06 14.8 0.0 1.1 0 frame_6 Domain annotation for each sequence: >> frame_6 [No individual domains that satisfy reporting thresholds (although complete target did)] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 100.00 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004191.1294.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1015.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001171.1295.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 849.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 275.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 86.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 337.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 56.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001381.1296.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9760 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 343.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 410.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 123.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003301.1297.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19344 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 301.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 77.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19344 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001651.1298.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (1762912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 11194.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-24 74.3 0.3 2.4e-23 71.7 0.3 2.0 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.7 0.3 4e-24 2.4e-23 1 168 [] 188820 188958 .. 188820 188958 .. 0.93 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (1762912 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.32u 0.02s 00:00:00.34 Elapsed: 00:00:00.32 # Mc/sec: 925.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (1762912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7051.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (1762912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 2291.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (1762912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.03 # Mc/sec: 20684.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-35 110.0 15.7 3.8e-35 110.0 15.7 6.9 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 110.0 15.7 6.4e-36 3.8e-35 1 155 [. 203833 204011 .. 203833 204012 .. 0.93 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (1762912 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.31u 0.02s 00:00:00.33 Elapsed: 00:00:00.30 # Mc/sec: 916.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (1762912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.04 # Mc/sec: 18554.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (1762912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 18510.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033601.12.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1175.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 16.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 66.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6288 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 98.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000651.129.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 427.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 31.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 48.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 510.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002691.1299.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002781.1300.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 496.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (45472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (45472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 181.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (45472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (45472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (45472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (45472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (45472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1914.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000261.1301.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (45472 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 709.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 364.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003531.1302.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002901.1303.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (46676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (46676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (46676 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1965.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (46676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (46676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (46676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (46676 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000241.1304.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (46676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 25.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 100.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004181.1305.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6428 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 270.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 249.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 78.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001611.1306.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19610 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 298.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003621.1307.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 394.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 24.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003381.1308.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 329.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (57416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (57416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (57416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 964.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (57416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (57416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (57416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2417.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (57416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 895.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000431.130.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (57416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11224 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 188.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 142.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002921.1309.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 47.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11850 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 30.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002761.1310.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 92.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 599.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 374.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000481.1311.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 452.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 329.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19630 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001591.1312.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 421.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10014 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 156.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003231.1313.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 26.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 108.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003181.1314.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23018 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23018 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 386.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23018 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23018 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23018 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23018 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23018 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001261.1315.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23018 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 522.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 59.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14848 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 625.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002231.1316.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 155.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 152.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 411.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003291.1317.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 125.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 84.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004691.1318.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 339.16 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 161.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 195.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000581.131.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (32706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (32706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (32706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (32706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1376.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (32706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 85.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (32706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (32706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000591.1319.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (32706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2181.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 966.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1041.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000131.1320.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (28714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (28714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (28714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 301.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (28714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (28714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (28714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (28714 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 447.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000891.1321.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (28714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 364.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (28718 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (28718 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (28718 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (28718 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (28718 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (28718 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (28718 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000881.1322.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (28718 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (49326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 197.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (49326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2076.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (49326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (49326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (49326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1736.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (49326 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 769.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (49326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 828.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000201.1323.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (49326 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 950.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001301.1324.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8640 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8640 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8640 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8640 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 363.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8640 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8640 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8640 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003541.1325.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8640 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (116144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1475.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (116144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1219.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-34 107.8 18.2 3.2e-34 107.0 18.2 1.4 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 107.0 18.2 5.4e-35 3.2e-34 2 155 .. 9639 9816 .. 9637 9817 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (116144 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 905.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (116144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4889.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (116144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (116144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1951.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (116144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (116144 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4088.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000021.1326.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 143.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 140.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 44.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002981.1327.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14562 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 37.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14562 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14562 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14562 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14562 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14562 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14562 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 613.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002281.1328.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14562 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (295102 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4603.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (295102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (295102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 2478.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (295102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (295102 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 6211.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (295102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3098.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (295102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3747.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000121.132.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (295102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10387.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-06 14.7 0.2 4.7e-06 14.2 0.2 1.1 0 frame_2 Domain annotation for each sequence: >> frame_2 [No individual domains that satisfy reporting thresholds (although complete target did)] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21476 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 452.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 755.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001401.1329.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 225.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7356 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-06 14.6 0.1 4.9e-06 14.1 0.1 1.1 0 frame_4 Domain annotation for each sequence: >> frame_4 [No individual domains that satisfy reporting thresholds (although complete target did)] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7356 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003861.1330.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 93.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (33208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (33208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1398.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (33208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 421.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (33208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 348.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (33208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1168.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (33208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 518.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (33208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000571.1331.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (33208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 541.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42600 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1793.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42600 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000301.1332.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 670.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 267.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 560.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002111.1333.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7808 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003741.1334.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 33.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 203.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 136.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002521.1335.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 169.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 53.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 208.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002471.1336.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 384.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22896 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 357.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001271.1337.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 240.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (38804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 651.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (38804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (38804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 605.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (38804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (38804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1633.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (38804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (38804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000401.1338.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (38804 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (114574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (114574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4823.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (114574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (114574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (114574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1455.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (114574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (114574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000301.133.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (114574 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 835.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 208.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 79.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19844 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 309.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001571.1339.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 333.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14096 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 219.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002371.1340.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 496.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1291.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1544.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36690 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 95.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 385.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000441.1341.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 146.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-23 71.4 0.0 4.3e-23 70.9 0.0 1.2 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.9 0.0 7.1e-24 4.3e-23 2 168 .] 13 190 .. 12 190 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13154 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 220.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 52.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 463.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13154 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (13148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (13148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 378.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002501.1342.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (13148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13532 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 227.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 171.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002441.1343.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 569.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11384 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 191.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 144.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002861.1344.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (48858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 513.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (48858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (48858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 762.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (48858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2056.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (48858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 127.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (48858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1719.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (48858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000211.1345.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (48858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6226 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 97.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 262.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 16.19 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004201.1346.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35020 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 546.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 140.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 588.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000531.1347.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 132.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 142.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003601.1348.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (729140 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.08 # Mc/sec: 3837.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (729140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5687.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (729140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6124.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (729140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7655.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (729140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 8555.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (729140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4630.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (729140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2916.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000011.134.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (729140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1895.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 615.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14618 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 38.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 228.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002261.1349.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 51.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002531.1350.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 651.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15472 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 61.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 40.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002151.1351.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15472 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7012 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7012 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7012 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7012 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7012 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7012 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7012 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004021.1352.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7012 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 395.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 473.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 118.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002911.1353.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11242 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 119.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29986 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1262.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 380.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000751.1354.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 77.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 124.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7422 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 94.26 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003831.1355.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 181.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 168.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 137.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 28.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003091.1356.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7858 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 330.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003731.1357.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 276.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13484 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002451.1358.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 141.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (229798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 919.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (229798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2412.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (229798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9674.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (229798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8088.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (229798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3860.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (229798 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3584.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (229798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000161.135.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (229798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 140.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35236 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 549.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1240.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 91.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000511.1359.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 185.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 116.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11054 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002971.1360.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 574.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002031.1361.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 90.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003961.1362.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12770 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12770 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12770 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12770 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 449.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12770 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12770 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12770 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002571.1363.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12770 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 634.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18032 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 189.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 46.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001811.1364.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 403.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25882 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 103.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 67.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001081.1365.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1134.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001011.1366.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26944 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15038 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 60.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002211.1367.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 190.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21362 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001421.1368.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (315458 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4006.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (315458 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1261.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (315458 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6640.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (315458 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4921.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (315458 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11104.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (315458 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 2649.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (315458 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 820.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000081.136.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (315458 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3312.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20766 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 348.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001471.1369.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20766 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (28596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (28596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (28596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (28596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 114.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (28596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (28596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 300.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (28596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000911.1370.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (28596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1203.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 679.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19294 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 300.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 812.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-25 79.0 0.0 1.8e-25 78.6 0.0 1.1 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 78.6 0.0 3e-26 1.8e-25 2 167 .. 1637 1816 .. 1636 1817 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19294 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 324.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (19288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (19288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001661.1371.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (19288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002551.1372.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 304.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 90.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 134.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003521.1373.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 72.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 46.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18060 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001791.1374.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 140.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003001.1375.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 348.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003271.1376.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 26.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003201.1377.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (30436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (30436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1281.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (30436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (30436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (30436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1071.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (30436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 511.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (30436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 319.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000731.1378.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (30436 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (125008 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (125008 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (125008 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1950.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (125008 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2100.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (125008 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 325.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (125008 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1312.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (125008 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000261.137.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (125008 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5262.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001071.1379.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21670 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 275.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21670 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21670 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 364.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21670 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21670 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 227.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21670 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21670 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 338.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001371.1380.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21670 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 75.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 198.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001711.1381.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18892 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 232.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 110.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004131.1382.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 26.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8838 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 137.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003471.1383.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 372.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (41878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.8e-19 56.9 0.0 1.3e-18 56.4 0.0 1.2 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.4 0.0 2.1e-19 1.3e-18 2 167 .. 18 186 .. 17 187 .. 0.95 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (41878 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 351.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (41878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (41878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 167.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (41878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (41878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (41878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 653.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (41878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (21108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 607.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000311.1384.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 87.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004061.1385.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6914 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 291.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (40942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (40942 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 638.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (40942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (40942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (40942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (40942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (40942 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000321.1386.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (40942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 519.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (63978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (63978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (63978 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 166.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (63978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2693.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (63978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (63978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (63978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1074.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000111.1387.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (63978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 671.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 218.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 289.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001961.1388.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (393110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6132.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (393110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6918.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (393110 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 2496.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (393110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1022.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (393110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6604.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (393110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4127.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (393110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000031.138.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (393110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 8274.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 25.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 163.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003311.1389.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 102.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (70782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (70782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (70782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (70782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (70782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (70782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (70782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000061.1390.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (70782 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1104.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 333.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26266 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26266 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001051.1391.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 313.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 384.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001211.1392.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 731.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001461.1393.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 52.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 206.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 138.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 34.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002481.1394.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 371.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 490.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 75.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 116.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 455.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000841.1395.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 36.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003421.1396.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 683.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 326.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 77.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 817.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 246.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001641.1397.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 303.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 47.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 125.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11984 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 201.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11984 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 504.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002751.1398.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (306910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3897.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (306910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3222.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (306910 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 2578.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (306910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 12920.91 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (306910 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4787.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (306910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10803.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (306910 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1227.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033731.13.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (306910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (183600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (183600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 477.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (183600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2331.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (183600 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6462.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (183600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (183600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (183600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7729.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000201.139.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (183600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2864.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (33958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (33958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (33958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1429.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (33958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (33958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (33958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (33958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000551.1399.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (33958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7088 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7088 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7088 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7088 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7088 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7088 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7088 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003971.1400.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7088 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 394.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002931.1401.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 446.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1236.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000501.1402.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35120 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1478.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 569.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 54.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 227.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 171.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002431.1403.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16484 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 173.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 580.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 209.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002021.1404.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 693.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 85.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 752.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001411.1405.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 899.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 19.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 261.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003821.1406.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7430 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31998 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31998 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31998 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31998 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31998 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1347.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31998 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 127.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31998 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000641.1407.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31998 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (59744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (59744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (59744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (59744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (59744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2515.22 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (59744 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 932.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (59744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000141.1408.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (59744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (104984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1637.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (104984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4419.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (104984 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 419.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (104984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (104984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (104984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1102.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (104984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000331.140.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (104984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 272.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 81.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 213.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 716.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 342.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001481.1409.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 52.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 16.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 218.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6210 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 78.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004211.1410.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 38.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002241.1411.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 18.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 119.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003981.1412.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004011.1413.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8600 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 34.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 302.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 22.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8600 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003561.1414.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8600 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20316 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20316 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20316 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20316 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20316 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 715.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20316 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20316 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001511.1415.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20316 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 32.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12572 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 529.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002591.1416.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 22.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 90.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 145.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003511.1417.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 34.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17324 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001951.1418.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (324448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6829.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (324448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3406.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (324448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5061.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (324448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 843.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (324448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11420.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (324448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (324448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000061.141.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (324448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5450.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11448 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 192.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11448 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002851.1419.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11448 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 469.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 187.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002951.1420.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 174.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 454.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27054 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1138.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001001.1421.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27054 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18302 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 307.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001741.1422.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003131.1423.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1413.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 509.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 626.22 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000341.1424.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (40142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 160.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 98.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001131.1425.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 414.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 660.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 263.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15696 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002131.1426.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 637.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 190.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001771.1427.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 552.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002511.1428.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 137.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (119928 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 311.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (119928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4221.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (119928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (119928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (119928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1523.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (119928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (119928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1870.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000281.142.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (119928 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 153.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 425.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002721.1429.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12078 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19518 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 327.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19518 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19518 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 78.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19518 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 247.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19518 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 304.48 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19518 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19518 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001621.1430.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19518 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 300.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 323.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 244.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001671.1431.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 677.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 72.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 761.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001781.1432.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 187.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11176 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 141.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002941.1433.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 423.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 31.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 152.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 187.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002731.1434.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16056 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 168.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16056 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16056 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002101.1435.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 675.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10328 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10328 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10328 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10328 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10328 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10328 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10328 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003171.1436.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10328 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 363.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16214 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 570.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 205.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002041.1437.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 453.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35728 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000471.1438.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1504.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (52678 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1854.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.6e-14 40.5 0.0 1.6e-13 39.8 0.0 1.3 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.8 0.0 2.6e-14 1.6e-13 3 167 .. 7451 7639 .. 7450 7640 .. 0.82 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (52678 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 442.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (52678 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2217.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (52678 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (52678 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (52678 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (52678 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (52678 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-50 160.4 0.0 3.1e-50 159.9 0.0 1.1 1 AOIprotein5 Domain annotation for each sequence: >> AOIprotein5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 159.9 0.0 5.1e-51 3.1e-50 6 321 .. 2625 2958 .. 2623 2959 .. 0.80 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (27970 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 450.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (27970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000451.143.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-50 160.4 0.0 3.1e-50 159.9 0.0 1.1 1 AOIprotein5 Domain annotation for each sequence: >> AOIprotein5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 159.9 0.0 5.1e-51 3.1e-50 6 321 .. 2625 2958 .. 2623 2959 .. 0.80 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (27970 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 450.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (63706 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 993.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (63706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 165.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (63706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (63706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (63706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (63706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (63706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 254.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000121.1439.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (63706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 114.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003051.1440.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 118.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9350 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003391.1441.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 567.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002071.1442.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27500 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 429.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27500 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 288.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27500 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27500 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27500 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27500 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27500 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000971.1443.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27500 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 19.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 115.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 77.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003841.1444.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 94.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13202 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 205.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 221.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 52.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002491.1445.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 167.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (33078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (33078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (33078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 132.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (33078 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 516.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (33078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (33078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (33078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1392.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000581.1446.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (33078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 244.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002271.1447.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 30.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11664 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 410.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002811.1448.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (78408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (78408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (78408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (78408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (78408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2759.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (78408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (78408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000351.144.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (78408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 145.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 90.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 109.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003551.1449.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 512.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 204.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002671.1450.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24374 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 857.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24374 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24374 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 309.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24374 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24374 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24374 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24374 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020001151.1451.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24374 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 228.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13616 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002421.1452.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 215.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 257.48 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 77.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004231.1453.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 135.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020003501.1454.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 233.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020004111.1455.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (50064 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (50064 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1762.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (50064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (50064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (50064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (50064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2107.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (50064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020000191.1456.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (50064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 635.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16898 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 67.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 594.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002001.1457.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11526 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11526 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11526 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11526 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11526 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11526 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11526 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_BHZJ020002831.1458.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11526 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 193.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (58712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 234.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (58712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2471.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (58712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (58712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (58712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2066.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (58712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 986.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (58712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 745.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000421.145.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (58712 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9850806 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.06 # Mc/sec: 17238.91 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9850806 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.52u 0.01s 00:00:00.53 Elapsed: 00:00:00.15 # Mc/sec: 23116.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9850806 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.08 # Mc/sec: 15638.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9850806 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.37u 0.03s 00:00:00.40 Elapsed: 00:00:00.18 # Mc/sec: 23039.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.1e-50 158.5 0.2 5e-24 74.0 0.0 4.3 2 frame_4 4.8e-37 116.3 0.1 2.3e-23 71.8 0.1 2.3 2 frame_5 2.8e-22 68.3 0.1 6.8e-22 67.0 0.1 1.7 1 frame_3 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.0 0.0 2.5e-24 5e-24 2 168 .] 841 1008 .. 840 1008 .. 0.90 2 ! 56.4 0.1 6.3e-19 1.3e-18 5 168 .] 1408873 1409011 .. 1408869 1409011 .. 0.88 >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.4 0.0 1.2e-14 2.5e-14 2 167 .. 1447188 1447356 .. 1447187 1447357 .. 0.94 2 ! 71.8 0.1 1.1e-23 2.3e-23 2 167 .. 1629579 1629758 .. 1629578 1629759 .. 0.94 >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.0 0.1 3.4e-22 6.8e-22 1 168 [] 1034492 1034630 .. 1034492 1034630 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9850806 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 3 (0.5); expected 0.1 (0.02) Passed Vit filter: 3 (0.5); expected 0.0 (0.001) Passed Fwd filter: 3 (0.5); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 4.56u 0.13s 00:00:04.68 Elapsed: 00:00:01.60 # Mc/sec: 1034.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9850806 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.38u 0.04s 00:00:00.42 Elapsed: 00:00:00.21 # Mc/sec: 1219.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9850806 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.10u 0.02s 00:00:00.12 Elapsed: 00:00:00.09 # Mc/sec: 4378.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.4e-33 102.4 17.4 8.4e-33 102.4 17.4 15.9 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 102.4 17.4 1.4e-33 8.4e-33 2 155 .. 1047104 1047281 .. 1047102 1047282 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9850806 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.56u 0.05s 00:00:01.61 Elapsed: 00:00:01.37 # Mc/sec: 1121.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 143.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (26040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (26040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 749.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (26040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328191.1459.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (102030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (102030 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1591.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (102030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4295.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (102030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (102030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (102030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (102030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3591.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_CP0328201.1460.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (102030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (72216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (72216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (72216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (72216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (72216 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (72216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (72216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000281.1461.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (72216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (164328 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2563.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (164328 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2760.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (164328 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2086.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (164328 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1725.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (164328 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (164328 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6918.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (164328 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000191.1462.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (164328 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5784.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (1087136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4348.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (1087136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 9131.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (1087136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 8479.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (1087136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2826.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (1087136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 22884.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (1087136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 6903.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (1087136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 12755.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000011.1463.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (1087136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 11414.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (154036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (154036 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 308.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (154036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6484.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (154036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1956.26 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (154036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (154036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (154036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000201.1464.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (154036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (54380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 217.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (54380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (54380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (54380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (54380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (54380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (54380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1914.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000291.1465.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (54380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (466460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5924.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (466460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4897.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (466460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 9818.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (466460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (466460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 8209.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (466460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7276.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (466460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7836.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000071.1466.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (466460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1865.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (267982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3403.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (267982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 696.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (267982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (267982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11282.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (267982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 9432.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (267982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (267982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1071.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000141.1467.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (267982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (186990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7872.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-22 67.2 0.0 8.1e-22 66.8 0.0 1.2 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.8 0.0 1.3e-22 8.1e-22 2 168 .] 18092 18269 .. 18091 18269 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (186990 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.05 # Mc/sec: 628.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (186990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2917.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (186990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (186990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2374.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (186990 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 486.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (186990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 747.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (186990 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6582.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1322.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000181.1468.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1182.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1489.03 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000461.146.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (436784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 7687.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (436784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6813.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (436784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7337.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (436784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (436784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1135.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (436784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1747.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (436784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9194.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000091.1469.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (436784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5547.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (251558 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3924.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (251558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3194.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (251558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (251558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8854.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (251558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (251558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (251558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2641.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000151.1470.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (251558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (374418 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4755.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (374418 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 973.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (374418 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 2920.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (374418 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3931.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (374418 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6290.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (374418 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (374418 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13179.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000101.1471.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (374418 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (113252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (113252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (113252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4767.91 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (113252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (113252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3986.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (113252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (113252 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1766.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000221.1472.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (113252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 410.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 381.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24436 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000301.1473.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (907392 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.07 # Mc/sec: 5457.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (907392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3629.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (907392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 7622.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (907392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9527.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (907392 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 7077.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (907392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 15970.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (907392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11523.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000021.1474.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (907392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2359.22 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (458308 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 3574.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (458308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 16132.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (458308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1833.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (458308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (458308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 19294.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (458308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4812.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (458308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000081.1475.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (458308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5820.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 149.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 597.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 238.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000321.1476.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 221.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (282554 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 734.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (282554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1130.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (282554 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4407.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (282554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2966.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (282554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (282554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9945.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (282554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4746.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000131.1477.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (282554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5947.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-26 79.9 0.1 4.2e-24 74.2 0.1 2.2 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.2 0.1 7e-25 4.2e-24 1 168 [] 11032 11170 .. 11032 11170 .. 0.91 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (298588 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.09 # Mc/sec: 557.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (298588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 12570.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-34 106.9 18.2 8.6e-34 105.6 18.2 1.7 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 105.6 18.2 1.4e-34 8.6e-34 2 155 .. 26530 26707 .. 26528 26708 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (298588 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.06u 0.01s 00:00:00.06 Elapsed: 00:00:00.07 # Mc/sec: 665.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (298588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10510.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (298588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3135.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (298588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 776.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (298588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (298588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 143.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000121.1478.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (67346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (67346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (67346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (67346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (67346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (67346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (67346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2370.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000411.147.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (67346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (84874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 220.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (84874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1077.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (84874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (84874 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 1493.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (84874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (84874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (84874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1324.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000251.1479.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (84874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3573.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (95166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (95166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 999.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (95166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (95166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (95166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 247.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (95166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (95166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000241.1480.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (95166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (797432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3189.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (797432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 28069.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (797432 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 4146.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (797432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 13396.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (797432 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 16785.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (797432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (797432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10127.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000031.1481.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (797432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8373.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (672642 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00.06 # Mc/sec: 3946.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (672642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8542.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (672642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 9439.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (672642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7062.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (672642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1748.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (672642 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 5246.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (672642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11300.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000041.1482.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (672642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (75900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (75900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 197.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (75900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (75900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (75900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (75900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2671.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (75900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000261.1483.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (75900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (203084 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 528.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (203084 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (203084 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2579.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (203084 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4274.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (203084 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (203084 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7148.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (203084 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2132.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000171.1484.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (203084 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (350028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 910.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (350028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5880.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (350028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 14736.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (350028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1400.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (350028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4445.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (350028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12320.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (350028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5460.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000111.1485.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (350028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (605182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5083.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (605182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3842.91 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (605182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (605182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9440.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (605182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 12739.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (605182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (605182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6354.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000051.1486.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (605182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10651.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 747.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 269.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-26 80.7 0.0 5.3e-26 80.4 0.0 1.1 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.4 0.0 8.9e-27 5.3e-26 2 168 .] 3046 3213 .. 3045 3213 .. 0.90 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 356.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (21222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000311.1487.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (212924 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 4482.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (212924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3321.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (212924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (212924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2704.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (212924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.4e-13 37.8 0.1 1.2e-11 33.7 0.1 2.1 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.7 0.1 1.9e-12 1.2e-11 4 168 .] 11144 11285 .. 11141 11285 .. 0.86 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (212924 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.04 # Mc/sec: 894.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (212924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (212924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1315.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000161.1488.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (200632 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8446.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (200632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3129.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (200632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (200632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2106.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (200632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (200632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (200632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7062.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000141.148.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (200632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (98580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (98580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 394.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (98580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (98580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1656.14 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (98580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (98580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (98580 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000231.1489.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (98580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4150.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (72598 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (72598 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (72598 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3056.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (72598 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 921.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (72598 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (72598 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1132.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (72598 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 290.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000271.1490.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (72598 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2555.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (559782 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 2910.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (559782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1455.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (559782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2239.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (559782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (559782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (559782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 23566.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (559782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9404.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000061.1491.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (559782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 19704.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (120578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (120578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1266.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (120578 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1881.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (120578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (120578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5076.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (120578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-25 76.4 0.0 1.4e-24 75.8 0.0 1.3 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.8 0.0 2.3e-25 1.4e-24 2 167 .. 7575 7754 .. 7574 7755 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (120578 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.03 # Mc/sec: 675.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (120578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1322.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WBKJ010000211.1492.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 275.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 20.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 131.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001121.1493.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001161.1494.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6410 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (90308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (90308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3178.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (90308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (90308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (90308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (90308 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (90308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1146.91 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000371.1495.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (90308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (76730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 974.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (76730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2700.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (76730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (76730 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1196.99 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (76730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 199.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (76730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (76730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1289.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000461.1496.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (76730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (53460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (53460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (53460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 213.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (53460 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 678.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (53460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2250.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (53460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1881.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (53460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000591.1497.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (53460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (103830 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (103830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (103830 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (103830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 269.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (103830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3654.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (103830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (103830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000341.1498.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (103830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4371.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-40 126.0 0.0 4.4e-23 70.9 0.0 4.2 2 frame_1 2.1e-18 55.6 0.1 2.6e-17 52.1 0.1 2.2 1 frame_4 2.2e-09 26.3 0.3 1.7e-08 23.4 0.1 2.1 0 frame_5 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.9 0.0 2.2e-23 4.4e-23 4 167 .. 117649 117826 .. 117646 117827 .. 0.90 2 ! 45.1 0.0 1.8e-15 3.7e-15 2 167 .. 194724 194892 .. 194723 194893 .. 0.95 >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.1 0.1 1.3e-17 2.6e-17 2 168 .] 373994 374135 .. 373993 374135 .. 0.88 >> frame_5 [No individual domains that satisfy reporting thresholds (although complete target did)] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (3826086 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 3 (0.5); expected 0.1 (0.02) Passed Vit filter: 3 (0.5); expected 0.0 (0.001) Passed Fwd filter: 3 (0.5); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 1.80u 0.06s 00:00:01.86 Elapsed: 00:00:00.64 # Mc/sec: 1004.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (3826086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 # Mc/sec: 2486.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (3826086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.07 # Mc/sec: 19239.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (3826086 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.17u 0.02s 00:00:00.19 Elapsed: 00:00:00.10 # Mc/sec: 16107.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (3826086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.06u 0.02s 00:00:00.08 Elapsed: 00:00:00.05 # Mc/sec: 11937.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (3826086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00.04 # Mc/sec: 10043.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (3826086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.04 # Mc/sec: 3826.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (3826086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.06u 0.01s 00:00:00.06 Elapsed: 00:00:00.03 # Mc/sec: 16197.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1320.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1322.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1182.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1315.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1176.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033591.14.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1315.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (132834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2072.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (132834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 345.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (132834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (132834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (132834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (132834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5592.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (132834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 531.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000271.149.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (132834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1020.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 853.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 63.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000821.1499.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 378.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (51824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (51824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-06 15.8 0.0 0.00043 9.1 0.0 2.7 0 frame_5 Domain annotation for each sequence: >> frame_5 [No individual domains that satisfy reporting thresholds (although complete target did)] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (51824 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 435.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (51824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 207.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (51824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (51824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (51824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1824.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000621.1500.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (51824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13152 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001031.1501.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (298844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3137.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (298844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (298844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5020.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (298844 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 12581.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (298844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 10519.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (298844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4661.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (298844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000031.1502.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (298844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3795.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 760.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000881.1503.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21604 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 909.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5e-12 34.9 0.0 8.1e-11 31.0 0.0 2.3 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.0 0.0 1.3e-11 8.1e-11 5 168 .] 20959 21099 .. 20955 21099 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (170432 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 715.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (170432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7175.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (170432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (170432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5999.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (170432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 443.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (170432 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2658.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (170432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (170432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2164.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1314.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000151.1504.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (59432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (59432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (59432 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (59432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 754.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (59432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (59432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2502.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (59432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000561.1505.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (59432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (179978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2807.66 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (179978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (179978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3023.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (179978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6335.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (179978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (179978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (179978 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7577.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000101.1506.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (179978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 335.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 361.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000891.1507.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 55.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6742 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 70.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001141.1508.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (163290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (163290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2743.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (163290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5747.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (163290 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2547.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (163290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (163290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (163290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000181.150.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (163290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 106.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001081.1509.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 158.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (108780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (108780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1827.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (108780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (108780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4579.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (108780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 435.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (108780 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1696.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (108780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000331.1510.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (108780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 88.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6952 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001131.1511.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 116.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 124.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1311.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31162 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000731.1512.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (170810 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.9e-19 57.5 0.0 9.5e-19 56.8 0.0 1.3 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.8 0.0 1.6e-19 9.5e-19 2 168 .] 24265 24427 .. 24264 24427 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (170810 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.05 # Mc/sec: 573.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (170810 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (170810 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2664.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (170810 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (170810 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (170810 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7191.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (170810 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000141.1513.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (53034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 827.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (53034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 556.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (53034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1866.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (53034 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 212.14 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (53034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (53034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 137.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (53034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000611.1514.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (53034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (218932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (218932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3678.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (218932 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9217.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (218932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (218932 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3853.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (218932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (218932 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000061.1515.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (218932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2780.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 174.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001051.1516.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1160.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27572 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000771.1517.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (65776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (65776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (65776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 690.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (65776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (65776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1105.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (65776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (65776 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1026.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000521.1518.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (65776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 835.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (162356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 649.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (162356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (162356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 422.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (162356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (162356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (162356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (162356 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000191.151.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (162356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5714.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (143288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6032.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (143288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 573.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (143288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5043.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (143288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (143288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2407.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (143288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (143288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1504.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000201.1519.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (143288 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 305.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 22.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001111.1520.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (139102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (139102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5856.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (139102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (139102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4896.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-34 107.1 15.8 2.9e-34 107.1 15.8 3.7 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 107.1 15.8 4.8e-35 2.9e-34 1 155 [. 12805 12983 .. 12805 12984 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (139102 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.03 # Mc/sec: 723.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (139102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (139102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (139102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000211.1521.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 233.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 282.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 346.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 373.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000861.1522.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 936.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (174202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (174202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (174202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (174202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2717.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (174202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (174202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2212.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (174202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000121.1523.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (174202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1829.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 233.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000991.1524.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (85006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 340.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (85006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 892.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (85006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (85006 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 221.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (85006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (85006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3578.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (85006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2992.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000421.1525.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (85006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1326.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (53120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (53120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (53120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 212.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (53120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 674.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (53120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (53120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (53120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 892.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000601.1526.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (53120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1139.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000791.1527.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (156114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (156114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2622.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (156114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6572.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (156114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (156114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (156114 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2435.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (156114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5495.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000171.1528.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (156114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 624.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (818794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3275.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (818794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2128.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (818794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 17235.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (818794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6877.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (818794 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 4257.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (818794 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 3466.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (818794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4298.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000011.152.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (818794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 9607.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (203494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (203494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3174.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (203494 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3581.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (203494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2136.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (203494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 813.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (203494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 529.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (203494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000081.1529.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (203494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2584.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 57.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 225.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14464 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 183.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 151.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000971.1530.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 685.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 204.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000921.1531.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 50.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (112808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3970.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (112808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (112808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 293.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (112808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (112808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (112808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (112808 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1759.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000311.1532.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (112808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4749.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000901.1533.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 91.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 367.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 22.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001101.1534.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13720 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13720 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 144.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001001.1535.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (178642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 464.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (178642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (178642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7520.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (178642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (178642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (178642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (178642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6288.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000111.1536.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (178642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 819.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19462 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 326.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 247.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 77.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000931.1537.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19462 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 685.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 352.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 287.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 58.77 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000851.1538.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22602 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (495522 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3865.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (495522 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.08 # Mc/sec: 1040.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (495522 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6293.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (495522 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5202.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (495522 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10430.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (495522 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1288.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (495522 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 8721.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000041.153.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (495522 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1982.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (102634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (102634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (102634 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1077.66 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (102634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1724.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (102634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (102634 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (102634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000351.1539.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (102634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (61534 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 646.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (61534 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (61534 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (61534 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (61534 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2590.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (61534 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 959.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (61534 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000541.1540.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (61534 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17818 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 627.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 226.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 299.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 750.14 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000961.1541.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 71.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000841.1542.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 494.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29462 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1037.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29462 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000751.1543.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29462 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 16.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001151.1544.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 297.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 672.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 320.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000941.1545.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000911.1546.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (28086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 988.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (28086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (28086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (28086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1182.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (28086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (28086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (28086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 73.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000761.1547.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (28086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (47854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (47854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (47854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 746.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (47854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 803.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (47854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 502.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (47854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (47854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 607.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000661.1548.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (47854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 341.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20314 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 855.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20314 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 316.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 257.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 213.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000571.154.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 52.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 346.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001091.1549.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (121342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (121342 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1892.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (121342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4271.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (121342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (121342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 315.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (121342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5108.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-26 82.1 0.0 3.4e-14 42.0 0.0 2.4 2 frame_5 8.2e-19 57.0 0.1 1.4e-18 56.3 0.1 1.4 1 frame_3 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.0 0.0 1.1e-14 3.4e-14 1 54 [. 5069 5122 .. 5069 5128 .. 0.93 2 ! 38.3 0.1 1.5e-13 4.6e-13 81 168 .] 5125 5207 .. 5119 5207 .. 0.92 >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.3 0.1 4.6e-19 1.4e-18 2 167 .. 14708 14876 .. 14707 14877 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (121342 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 2 (0.333333); expected 0.0 (0.001) Passed Fwd filter: 2 (0.333333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00.06 # Mc/sec: 339.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (121342 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 485.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1161.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1320.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1180.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000271.1550.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1166.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (67442 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1052.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (67442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (67442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (67442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (67442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (67442 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 856.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (67442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1133.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000501.1551.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (67442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (85984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (85984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3026.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (85984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (85984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (85984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (85984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (85984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000411.1552.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (85984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1341.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (115632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (115632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1942.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (115632 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (115632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (115632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 462.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (115632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4070.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (115632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000291.1553.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (115632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4868.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (137652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (137652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (137652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1445.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (137652 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4845.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (137652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-13 39.0 2.8 2.2e-13 38.3 2.8 1.1 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.3 2.8 3.6e-14 2.2e-13 56 142 .. 21034 21117 .. 21018 21130 .. 0.87 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (137652 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.10 # Mc/sec: 579.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (137652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000221.1554.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (137652 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2147.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (30894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (30894 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (30894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (30894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (30894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1087.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (30894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 324.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (30894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 519.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000711.1555.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (30894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (88758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (88758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 355.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (88758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1127.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (88758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (88758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 931.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (88758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1491.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (88758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3124.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000381.1556.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (88758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3736.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (80108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (80108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (80108 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3372.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (80108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (80108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (80108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 841.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (80108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000441.1557.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (80108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 763.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 364.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 338.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 275.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000871.1558.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 330.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 222.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000551.155.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1038.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29504 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 309.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 460.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000741.1559.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (38188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (38188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (38188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 99.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (38188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (38188 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (38188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (38188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1607.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000691.1560.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (38188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1344.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (75280 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 301.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (75280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2649.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (75280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1264.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (75280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (75280 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (75280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (75280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000471.1561.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (75280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 195.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (506896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10670.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (506896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2027.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (506896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5322.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (506896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8515.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (506896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1317.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (506896 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3953.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (506896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6437.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000011.1562.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (506896 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 8921.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (171178 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (171178 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2670.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (171178 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2875.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (171178 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (171178 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6025.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (171178 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 684.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (171178 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7206.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000131.1563.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (171178 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (129934 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4573.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (129934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5470.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (129934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (129934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 519.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (129934 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2026.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (129934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (129934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000231.1564.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (129934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 35.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 567.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 53.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001011.1565.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 171.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (205468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (205468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2157.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (205468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 8650.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (205468 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3205.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (205468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3451.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (205468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (205468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3616.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000071.1566.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (205468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 821.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (62212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (62212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (62212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2619.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (62212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2189.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (62212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 161.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (62212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 970.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (62212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000531.1567.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (62212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1045.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 263.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001171.1568.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6252 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 98.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 145.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 156.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 118.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 37.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000591.156.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 895.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 396.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 427.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000811.1569.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 66.14 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (87150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 915.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (87150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (87150 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (87150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1464.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (87150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 226.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (87150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (87150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000401.1570.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (87150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (200748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (200748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (200748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3372.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (200748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (200748 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 802.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (200748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (200748 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3131.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000091.1571.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (200748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 8451.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (101838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (101838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (101838 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1588.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (101838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4287.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (101838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (101838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (101838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000361.1572.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (101838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27434 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 427.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1154.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 460.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 288.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000781.1573.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (316186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 822.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (316186 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4932.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (316186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11129.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (316186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (316186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5311.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (316186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13311.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (316186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1264.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000021.1574.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (316186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4015.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (50446 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 201.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (50446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2123.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (50446 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 786.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (50446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (50446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1775.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (50446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (50446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000631.1575.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (50446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 847.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (118848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1996.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (118848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (118848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (118848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-05 12.0 0.0 3.2e-05 11.4 0.0 1.1 0 frame_5 Domain annotation for each sequence: >> frame_5 [No individual domains that satisfy reporting thresholds (although complete target did)] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (118848 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.08 # Mc/sec: 625.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (118848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (118848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000281.1576.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (118848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 465.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 34.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001021.1577.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 52.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (87738 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3693.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (87738 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (87738 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3088.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (87738 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 921.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (87738 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 228.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (87738 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (87738 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000391.1578.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (87738 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (32988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (32988 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 514.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (32988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 554.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (32988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (32988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (32988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1388.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (32988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 85.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000501.157.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (32988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (145970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2452.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (145970 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6145.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (145970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (145970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5138.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (145970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (145970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (145970 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2277.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000191.1579.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (145970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000951.1580.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (30340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1277.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (30340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (30340 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 473.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (30340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 121.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (30340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (30340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 318.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (30340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 509.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000721.1581.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (30340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1067.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (53812 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 215.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (53812 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (53812 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (53812 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (53812 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (53812 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (53812 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000581.1582.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (53812 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (66462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (66462 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (66462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (66462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (66462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2339.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (66462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (66462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2798.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000511.1583.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (66462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 436.16 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10360 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001071.1584.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10360 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (41964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (41964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (41964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 109.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (41964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (41964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (41964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 705.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (41964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000681.1585.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (41964 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1477.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 91.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000831.1586.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 386.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (112578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3962.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (112578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4739.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (112578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1891.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (112578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1429.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (112578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (112578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (112578 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000321.1587.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (112578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 292.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (68854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 722.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (68854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (68854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (68854 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1156.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (68854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (68854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1074.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (68854 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2898.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000491.1588.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (68854 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (69290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (69290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 879.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (69290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 180.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (69290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (69290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2917.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (69290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (69290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000391.158.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (69290 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 727.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001061.1589.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (70148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2953.23 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (70148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (70148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1178.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (70148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 280.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (70148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (70148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2469.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (70148 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1094.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000481.1590.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (70148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 736.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (49592 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 773.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (49592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2087.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (49592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 128.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (49592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1745.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (49592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (49592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (49592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000641.1591.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (49592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 629.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (114032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-24 74.2 0.0 7e-24 73.5 0.0 1.4 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.5 0.0 1.2e-24 7e-24 2 167 .. 7323 7502 .. 7322 7503 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (114032 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.03 # Mc/sec: 638.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (114032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4800.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (114032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (114032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 456.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (114032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (114032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (114032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000301.1592.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 336.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26482 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000801.1593.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 444.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (81852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (81852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (81852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (81852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1276.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (81852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (81852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 327.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (81852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000431.1594.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (81852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (48324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (48324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (48324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (48324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 811.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (48324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (48324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (48324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 753.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000651.1595.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (48324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (44982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (44982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 571.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (44982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (44982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (44982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (44982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (44982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000671.1596.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (44982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 701.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (269214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 9476.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (269214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (269214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4522.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (269214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (269214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (269214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1076.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (269214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11333.91 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000041.1597.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (269214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2826.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (56652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 951.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (56652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (56652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (56652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (56652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (56652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1994.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (56652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000571.1598.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (56652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (376204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (376204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 7919.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (376204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6320.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (376204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13242.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (376204 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 978.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (376204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3950.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (376204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5868.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033721.15.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (376204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4777.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1135.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 949.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000521.159.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 166.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 552.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 34.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 220.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010001041.1599.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (157020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 628.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (157020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (157020 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2449.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (157020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1648.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (157020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (157020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (157020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000161.1600.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (157020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (128260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5399.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (128260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (128260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (128260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 513.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (128260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (128260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2154.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (128260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2000.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000251.1601.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (128260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (152092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (152092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (152092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5353.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (152092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2372.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (152092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3201.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (152092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1596.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (152092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000181.1602.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (152092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2555.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (128496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (128496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (128496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (128496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5409.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (128496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (128496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (128496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000241.1603.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (128496 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (126644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (126644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (126644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (126644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (126644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (126644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (126644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000261.1604.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (126644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1975.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 147.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14024 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 218.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000981.1605.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 590.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (220268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (220268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3436.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (220268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2312.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (220268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7753.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (220268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 4636.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (220268 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 440.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (220268 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2797.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000051.1606.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (220268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3700.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (79906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3364.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (79906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (79906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (79906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (79906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (79906 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1246.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (79906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000451.1607.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (79906 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (61128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (61128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (61128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2573.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (61128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 953.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (61128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (61128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (61128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 776.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000551.1608.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (61128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (332080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1328.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (332080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5578.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (332080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4217.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (332080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3486.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (332080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (332080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5180.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (332080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 13980.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000071.160.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (332080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11689.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (33356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1404.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (33356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 133.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (33356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 560.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (33356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (33356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (33356 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 520.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (33356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_WKNQ010000701.1609.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (33356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (701116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.02 # Mc/sec: 14758.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (701116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7361.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (701116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1822.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (701116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2804.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (701116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 12339.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (701116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4452.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (701116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5468.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000041.1610.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (701116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5889.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (89256 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (89256 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3757.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (89256 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (89256 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3141.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (89256 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (89256 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 232.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (89256 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000231.1611.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (89256 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 357.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (978040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 6210.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (978040 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.05 # Mc/sec: 8235.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (978040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 1271.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (978040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 16431.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (978040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5134.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (978040 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.03 # Mc/sec: 5085.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (978040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 8606.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000021.1612.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (978040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3912.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 166.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 552.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 52.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000301.1613.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (404224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 7114.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (404224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6790.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (404224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4244.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (404224 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.04 # Mc/sec: 4254.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (404224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6305.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (404224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5133.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (404224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1050.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000121.1614.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (404224 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1616.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (581680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 8162.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (581680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7387.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (581680 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4537.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (581680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 4886.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (581680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 6825.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (581680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2326.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (581680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6107.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000091.1615.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (581680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1512.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-24 75.7 0.0 2.1e-24 75.2 0.0 1.2 1 frame_4 6.7e-11 31.2 0.0 6.7e-10 28.0 0.0 2.1 1 frame_3 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.2 0.0 7e-25 2.1e-24 2 168 .] 112474 112641 .. 112473 112641 .. 0.90 >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.0 0.0 2.2e-10 6.7e-10 4 168 .] 33953 34094 .. 33950 34094 .. 0.84 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (677728 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 2 (0.333333); expected 0.0 (0.001) Passed Fwd filter: 2 (0.333333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.24u 0.01s 00:00:00.25 Elapsed: 00:00:00.26 # Mc/sec: 437.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (677728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8607.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (677728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5286.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (677728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2710.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (677728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7116.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (677728 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 7133.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (677728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 7952.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (677728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1762.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (22882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (22882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 736.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (22882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1315.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000051.1616.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (994618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3978.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (994618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 6315.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (994618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5221.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (994618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 17505.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (994618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 20936.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (994618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2586.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-24 75.2 0.1 4e-23 71.0 0.1 2.2 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.0 0.1 6.7e-24 4e-23 1 168 [] 42417 42555 .. 42417 42555 .. 0.91 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (994618 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.17u 0.01s 00:00:00.18 Elapsed: 00:00:00.18 # Mc/sec: 928.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-33 103.5 16.8 3.7e-33 103.5 16.8 3.9 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 103.5 16.8 6.2e-34 3.7e-33 2 155 .. 61244 61421 .. 61242 61422 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (994618 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.17 # Mc/sec: 912.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1175.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000011.1617.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (148152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 385.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (148152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (148152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (148152 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2311.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (148152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (148152 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1555.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (148152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000211.1618.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (148152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (49048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (49048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.5e-35 108.7 15.8 9.5e-35 108.7 15.8 1.6 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 108.7 15.8 1.6e-35 9.5e-35 1 155 [. 145 323 .. 145 324 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (49048 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 382.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (49048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (49048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2064.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (49048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (49048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (49048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000431.161.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (21930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-22 67.2 0.2 3.7e-20 61.4 0.2 2.5 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.4 0.2 6.2e-21 3.7e-20 1 168 [] 47137 47279 .. 47137 47279 .. 0.87 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (612674 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.13 # Mc/sec: 791.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (612674 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7780.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (612674 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2450.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (612674 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 530.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (612674 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 12896.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (612674 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6433.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (612674 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9557.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (612674 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10783.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1315.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000071.1619.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (937040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 1218.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (937040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3748.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (937040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 # Mc/sec: 9862.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (937040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 7871.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (937040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 7308.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (937040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9838.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (937040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11900.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000031.1620.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (937040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 16491.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (673802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (673802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5659.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (673802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 14183.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (673802 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5255.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (673802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 11858.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (673802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8557.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (673802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.02 # Mc/sec: 3537.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000061.1621.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (673802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1751.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1543.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 571.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000261.1622.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 465.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 61.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 39.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000271.1623.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 644.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (37232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (37232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (37232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (37232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1567.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (37232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (37232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 148.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (37232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000251.1624.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (37232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 580.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 557.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 465.77 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000291.1625.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (242706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 970.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (242706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (242706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (242706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (242706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2548.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (242706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (242706 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3786.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000171.1626.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (242706 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5108.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000281.1627.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (610208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2440.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (610208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6407.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (610208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7749.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (610208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 10739.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (610208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.02 # Mc/sec: 5125.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (610208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 8563.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (610208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9519.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000081.1628.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (610208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1586.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 110.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 664.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1792.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000451.162.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 715.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (552314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1436.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (552314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 4308.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (552314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2209.26 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (552314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 23252.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (552314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9720.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (552314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7014.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (552314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5799.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000111.1629.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (552314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9278.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (320134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (320134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (320134 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 6738.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (320134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3361.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (320134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 832.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (320134 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 2497.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (320134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5378.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000151.1630.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (320134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11268.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (210954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 548.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (210954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (210954 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8881.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (210954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (210954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (210954 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7425.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (210954 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3290.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000191.1631.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (210954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (75002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 952.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (75002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 195.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (75002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (75002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (75002 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1170.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (75002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (75002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000241.1632.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (75002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (110430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (110430 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 1295.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (110430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1855.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (110430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1722.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (110430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4649.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (110430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (110430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000221.1633.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (110430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (580660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1509.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (580660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2322.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (580660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 20439.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (580660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7374.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (580660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 8148.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (580660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6096.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (580660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 4877.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000101.1634.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (580660 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4529.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (367966 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 12952.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (367966 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1471.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (367966 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 956.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (367966 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6181.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (367966 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 2870.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (367966 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (367966 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4673.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000141.1635.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (367966 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 5163.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (204336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2145.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (204336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 817.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (204336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (204336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (204336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (204336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8602.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (204336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7192.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000201.1636.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (204336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2595.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (248254 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (248254 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3152.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (248254 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10451.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (248254 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 993.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (248254 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8738.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (248254 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 645.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (248254 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-24 74.6 0.1 5.2e-24 73.9 0.1 1.3 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.9 0.1 8.6e-25 5.2e-24 2 167 .. 9572 9751 .. 9571 9752 .. 0.93 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (248254 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.05 # Mc/sec: 834.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1322.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000161.1637.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (220926 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (220926 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (220926 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2319.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (220926 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 9300.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (220926 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (220926 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3711.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (220926 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3446.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000181.1638.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (220926 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7776.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (166972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 434.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (166972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (166972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2120.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (166972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1753.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (166972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7029.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (166972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 667.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (166972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000171.163.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (166972 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (378348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6356.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (378348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (378348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1513.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (378348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3972.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (378348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (378348 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 7964.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (378348 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 4439.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAATLI0100000131.1639.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (378348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5902.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (67784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2853.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (67784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1138.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (67784 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1057.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (67784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (67784 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 176.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (67784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 860.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (67784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2386.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000521.1640.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (67784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (131544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2052.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (131544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 526.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (131544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (131544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1670.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (131544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (131544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2209.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (131544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000191.1641.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (131544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 342.01 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (58546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (58546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 614.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (58546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (58546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (58546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (58546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (58546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000601.1642.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (58546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (61586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (61586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 782.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (61586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (61586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (61586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2167.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (61586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 960.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (61586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2592.77 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000571.1643.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (61586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (65324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (65324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2750.14 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (65324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (65324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 685.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (65324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (65324 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (65324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1097.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000531.1644.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (65324 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 446.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26552 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000891.1645.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (249974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 999.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (249974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3174.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (249974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10523.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (249974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 649.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (249974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8799.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (249974 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3899.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (249974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000041.1646.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (249974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4199.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (93774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (93774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3300.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (93774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (93774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (93774 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1462.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (93774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (93774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000371.1647.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (93774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (37536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1321.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (37536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (37536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 150.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (37536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 476.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (37536 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 585.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (37536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (37536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000781.1648.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (37536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (629920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7999.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (629920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2519.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-25 77.3 0.0 2.4e-23 71.8 0.0 2.3 1 frame_5 3.8e-18 54.8 0.0 5.3e-18 54.4 0.0 1.2 1 frame_3 1.2e-10 30.4 0.0 9e-10 27.6 0.0 2.1 1 frame_4 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.8 0.0 1.2e-23 2.4e-23 1 168 [] 60731 60869 .. 60731 60869 .. 0.90 >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.4 0.0 2.6e-18 5.3e-18 2 167 .. 43809 43977 .. 43808 43978 .. 0.95 >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.6 0.0 4.5e-10 9e-10 5 168 .] 87561 87701 .. 87557 87701 .. 0.81 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (629920 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 3 (0.5); expected 0.1 (0.02) Passed Vit filter: 3 (0.5); expected 0.0 (0.001) Passed Fwd filter: 3 (0.5); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.33u 0.02s 00:00:00.35 Elapsed: 00:00:00.36 # Mc/sec: 293.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (629920 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 4913.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (629920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 13259.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (629920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (629920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3307.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (629920 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 11086.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1314.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1180.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000021.164.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 966.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000561.1649.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (61970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (68352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (68352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (68352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 273.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (68352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (68352 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1066.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (68352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (68352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 868.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000511.1650.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (68352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1419.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 161.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 677.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000771.1651.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (48980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 764.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (48980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2062.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (48980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 622.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (48980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (48980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (48980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1724.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (48980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000671.1652.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (48980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20858 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000971.1653.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31956 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31956 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31956 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 498.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31956 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31956 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31956 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31956 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000831.1654.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31956 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (211704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (211704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (211704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (211704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 550.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (211704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8912.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (211704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (211704 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3556.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000071.1655.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (211704 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3302.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (73974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (73974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (73974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (73974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3114.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (73974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1242.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (73974 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1153.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (73974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000481.1656.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (73974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2603.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000921.1657.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 94.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (119724 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 478.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (119724 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2011.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (119724 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1867.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (119724 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (119724 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (119724 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (119724 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5040.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000251.1658.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (119724 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1520.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (40664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (40664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (40664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (40664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 426.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (40664 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (40664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1711.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (40664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000481.165.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (40664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 162.66 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (107596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3787.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (107596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (107596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (107596 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1678.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (107596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 430.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (107596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1129.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (107596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 279.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000311.1659.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (107596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1807.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (72882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (72882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (72882 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1136.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (72882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3068.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (72882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (72882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (72882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000491.1660.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (72882 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 925.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6632 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001151.1661.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (93844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (93844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1191.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (93844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3303.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (93844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3950.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (93844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (93844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (93844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000361.1662.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (93844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (122912 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1917.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (122912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (122912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (122912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (122912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5174.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (122912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (122912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000241.1663.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (122912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (299776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (299776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3807.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (299776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (299776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4676.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (299776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1199.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (299776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10552.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (299776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000021.1664.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (299776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12620.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (64224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (64224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (64224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (64224 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2260.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (64224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 256.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (64224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 674.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (64224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 166.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000541.1665.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (64224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 256.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 306.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001121.1666.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 92.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (235198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (235198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4950.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (235198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 940.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (235198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8278.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (235198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 611.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (235198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3951.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (235198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000051.1667.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (235198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3669.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (52912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (52912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (52912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (52912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (52912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 825.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (52912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 888.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (52912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000651.1668.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (52912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 671.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 957.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 238.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22740 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000531.166.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (74038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (74038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (74038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3117.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (74038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (74038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (74038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (74038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000471.1669.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (74038 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (28572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1005.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (28572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 445.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (28572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (28572 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (28572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (28572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (28572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000851.1670.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (28572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (160108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2033.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (160108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6740.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (160108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (160108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2689.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (160108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (160108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (160108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2497.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000151.1671.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (160108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5635.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (57714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (57714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 732.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (57714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (57714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (57714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (57714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (57714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000611.1672.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (57714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (44074 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 559.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (44074 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (44074 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (44074 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1855.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (44074 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 462.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (44074 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 176.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (44074 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000741.1673.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (44074 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (124470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (124470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1580.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (124470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5240.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (124470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2091.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (124470 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (124470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4381.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (124470 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1941.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000231.1674.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (124470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 323.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (56080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (56080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 588.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (56080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1974.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (56080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (56080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 712.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (56080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 145.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (56080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000641.1675.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-06 13.1 0.0 1.5e-05 12.5 0.0 1.1 0 frame_3 Domain annotation for each sequence: >> frame_3 [No individual domains that satisfy reporting thresholds (although complete target did)] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (56080 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 786.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (47852 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (47852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (47852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (47852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 803.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (47852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (47852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 607.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (47852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000681.1676.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (47852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27482 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 288.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 461.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27482 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1156.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000871.1677.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 349.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8684 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 34.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8684 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 305.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8684 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8684 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8684 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8684 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8684 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001101.1678.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8684 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 110.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (391654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 13786.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (391654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6579.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (391654 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.05 # Mc/sec: 3297.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (391654 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 783.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (391654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4974.01 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (391654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6109.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (391654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4112.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000061.167.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (391654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 296.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18978 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 199.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000981.1679.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 49.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-35 109.9 15.8 4e-35 109.9 15.8 3.7 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 109.9 15.8 6.6e-36 4e-35 1 155 [. 408 586 .. 408 587 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22618 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 176.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 952.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 796.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 58.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 237.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 90.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000951.1680.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (22612 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (59896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 239.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (59896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (59896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2108.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (59896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (59896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (59896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (59896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1006.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000581.1681.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (59896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (28362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (28362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (28362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (28362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (28362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (28362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (28362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000861.1682.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (28362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (45710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1924.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (45710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (45710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (45710 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 713.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (45710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (45710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 767.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (45710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000721.1683.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (45710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (89554 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1397.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (89554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (89554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3152.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (89554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1504.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (89554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (89554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 940.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (89554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000381.1684.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (89554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 358.22 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (126778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (126778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5337.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (126778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (126778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (126778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (126778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (126778 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1977.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000221.1685.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (126778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (81260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (81260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (81260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1267.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (81260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3421.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (81260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (81260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (81260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000431.1686.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (81260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (127016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (127016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4470.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.9e-24 74.0 0.0 8.1e-24 73.3 0.0 1.4 1 frame_6 Domain annotation for each sequence: >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.3 0.0 1.3e-24 8.1e-24 2 167 .. 5811 5990 .. 5810 5991 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (127016 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 711.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (127016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1333.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (127016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1613.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (127016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 330.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (127016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 508.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (127016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1981.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1322.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000211.1687.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1182.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 313.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 98.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 414.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 64.19 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000911.1688.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24690 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (83874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (83874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (83874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (83874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (83874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (83874 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (83874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 880.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000331.168.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (83874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (143908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2417.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (143908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5065.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (143908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (143908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1511.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (143908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (143908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6058.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (143908 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1827.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000181.1689.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (143908 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 374.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (57498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (57498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (57498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (57498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (57498 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 896.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (57498 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (57498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000621.1690.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (57498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 55.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 269.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 331.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000961.1691.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (84054 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1311.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (84054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3538.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (84054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (84054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (84054 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2958.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (84054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (84054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000411.1692.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (84054 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (33182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (33182 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (33182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 421.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (33182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 348.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (33182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (33182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (33182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000821.1693.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (33182 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1396.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (103686 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1617.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (103686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (103686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (103686 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (103686 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4365.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (103686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (103686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000331.1694.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (103686 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (154618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (154618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6509.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (154618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (154618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1963.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (154618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1623.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (154618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 402.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (154618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000161.1695.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (154618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5442.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (99120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 396.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (99120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (99120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (99120 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 1744.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (99120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (99120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1546.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (99120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4172.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000351.1696.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (99120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (108676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1380.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (108676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4575.26 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (108676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (108676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (108676 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1141.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-19 58.0 0.0 5.9e-19 57.5 0.0 1.3 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.5 0.0 9.8e-20 5.9e-19 2 168 .] 524 686 .. 523 686 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (108676 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.03 # Mc/sec: 608.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (108676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3825.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (108676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1695.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (24108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 776.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (24108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000301.1697.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (24108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 762.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 304.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000991.1698.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (493378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7696.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (493378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (493378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10385.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (493378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 17366.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (493378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8288.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (493378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (493378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033691.16.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (493378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6265.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (76746 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2701.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (76746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (76746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1289.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (76746 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 306.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (76746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (76746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (76746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000361.169.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (76746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (198536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8358.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (198536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2084.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (198536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6988.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (198536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 794.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (198536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (198536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (198536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2521.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000081.1699.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (198536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 516.19 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (153654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1613.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (153654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6468.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (153654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (153654 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2397.00 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (153654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5408.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (153654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1951.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (153654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 399.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000171.1700.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (153654 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 614.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (34518 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1453.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (34518 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (34518 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 89.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (34518 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 138.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (34518 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 362.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (34518 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 438.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (34518 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1215.03 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000811.1701.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (34518 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (81658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (81658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3437.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (81658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (81658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (81658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (81658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (81658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000421.1702.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (81658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 857.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26224 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1104.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000901.1703.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 339.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 101.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 25.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001081.1704.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23262 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 390.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23262 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23262 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 979.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23262 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23262 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 818.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23262 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23262 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 295.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000941.1705.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23262 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 93.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 82.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 126.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000841.1706.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (47566 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2002.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (47566 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (47566 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (47566 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (47566 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 742.03 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (47566 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (47566 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000691.1707.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (47566 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (70382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (70382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (70382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (70382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 182.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (70382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 893.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (70382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (70382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000501.1708.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (70382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2477.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (533786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2135.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (533786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8327.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (533786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 22472.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (533786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3389.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (533786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8967.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (533786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 18789.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (533786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1387.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000031.170.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (533786 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5604.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (87856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (87856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1370.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (87856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3092.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (87856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (87856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (87856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (87856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1115.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000391.1709.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (87856 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3698.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 247.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 620.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14742 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 229.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001021.1710.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 206.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 556.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001051.1711.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13228 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (52422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (52422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 880.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (52422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 550.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (52422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (52422 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2206.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (52422 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (52422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000661.1712.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (52422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (191662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (191662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (191662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (191662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8068.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (191662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6746.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (191662 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (191662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000091.1713.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (191662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 766.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (189770 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (189770 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (189770 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (189770 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (189770 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (189770 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6679.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (189770 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1992.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000101.1714.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (189770 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2960.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (86732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (86732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (86732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (86732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (86732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3651.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (86732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3052.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (86732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 346.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000401.1715.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (86732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1457.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (225826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9507.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (225826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2371.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (225826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7949.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (225826 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 1761.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (225826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (225826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (225826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000061.1716.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (225826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3793.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23568 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23568 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23568 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23568 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23568 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23568 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23568 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000931.1717.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23568 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (111232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (111232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4682.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (111232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1412.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (111232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (111232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1167.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (111232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (111232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1735.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000281.1718.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (111232 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1868.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 538.77 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 257.14 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 39.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 160.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 61.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000581.171.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 58.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001031.1719.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 146.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 34.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 110.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 91.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 366.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 306.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001091.1720.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15338 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 257.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001011.1721.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (81014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 210.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (81014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1361.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (81014 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3410.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (81014 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2851.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (81014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1263.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (81014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 850.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (81014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000451.1722.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (81014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (165482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (165482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2780.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (165482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (165482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (165482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (165482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5824.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (165482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3483.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000141.1723.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (165482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (111918 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (111918 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1745.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (111918 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (111918 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1421.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (111918 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (111918 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (111918 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1880.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000271.1724.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (111918 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 90.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 304.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 364.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001111.1725.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 109.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36118 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000791.1726.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (101414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4269.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (101414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (101414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3569.77 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (101414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (101414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (101414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1582.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (101414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 263.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000341.1727.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (101414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (74554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (74554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (74554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (74554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 782.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (74554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (74554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (74554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000461.1728.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (74554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (193924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (193924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3025.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (193924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2462.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (193924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (193924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 775.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (193924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (193924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8164.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000151.172.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (193924 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6826.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 593.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1486.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 370.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 550.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000801.1729.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (169440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7133.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (169440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (169440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1779.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (169440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2846.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (169440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (169440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (169440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000131.1730.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (169440 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2643.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 112.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 104.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6682 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 17.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001141.1731.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (131436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (131436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (131436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (131436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (131436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (131436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-13 39.4 4.0 2.1e-13 38.4 2.8 1.8 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.4 2.8 3.4e-14 2.1e-13 56 142 .. 14389 14472 .. 14373 14485 .. 0.87 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (131436 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.06 # Mc/sec: 922.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000201.1732.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (131436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (59826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (59826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2518.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (59826 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1005.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (59826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (59826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (59826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 759.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (59826 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2105.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000591.1733.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (59826 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (47084 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (47084 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 188.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (47084 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (47084 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (47084 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (47084 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (47084 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1982.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000701.1734.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (47084 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (109352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3849.19 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (109352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (109352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1705.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (109352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (109352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1837.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (109352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (109352 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000291.1735.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (109352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 446.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 540.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1790.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000761.1736.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (300826 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1203.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (300826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10589.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (300826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12664.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (300826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3820.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (300826 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4692.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (300826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (300826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000011.1737.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (300826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5053.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 32.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12498 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 158.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001071.1738.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (43692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 458.77 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (43692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (43692 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 681.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (43692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (43692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1839.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (43692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (43692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1537.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000441.173.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (43692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (266816 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11232.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (266816 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4482.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (266816 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (266816 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4162.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (266816 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (266816 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9391.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (266816 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3388.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000031.1739.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (266816 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (44682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 750.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (44682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 567.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (44682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (44682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 469.16 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (44682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (44682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (44682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000731.1740.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (44682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (46002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (46002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (46002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (46002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (46002 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 717.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (46002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (46002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000711.1741.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (46002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15614 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001001.1742.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (119682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (119682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1256.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (119682 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1867.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (119682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5038.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (119682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (119682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (119682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000261.1743.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (119682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4212.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 214.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 537.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001061.1744.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 51.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7112 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 110.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 250.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001131.1745.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-27 84.1 0.0 1.8e-14 42.9 0.0 2.5 2 frame_4 3.2e-19 58.3 0.0 4.1e-19 58.0 0.0 1.1 1 frame_1 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.9 0.0 5.9e-15 1.8e-14 1 54 [. 5059 5112 .. 5059 5118 .. 0.93 2 ! 39.2 0.1 7.9e-14 2.4e-13 81 168 .] 5115 5197 .. 5109 5197 .. 0.92 >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.0 0.0 1.4e-19 4.1e-19 2 167 .. 5157 5325 .. 5156 5326 .. 0.95 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (63970 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 2 (0.333333); expected 0.0 (0.001) Passed Fwd filter: 2 (0.333333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 358.23 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (63970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (63970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 166.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (63970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 812.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (63970 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 997.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (63970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (63970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (63970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1320.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1298.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000551.1746.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1161.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13398 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 225.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13398 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 564.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 471.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 53.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100001041.1747.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 279.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 337.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 106.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 935.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000881.1748.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (91558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3854.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (91558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (91558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (91558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 366.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (91558 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1428.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (91558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (91558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000301.174.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (91558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 238.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (176906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (176906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-12 34.6 0.0 8.4e-11 30.9 0.0 2.1 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.9 0.0 1.4e-11 8.4e-11 5 168 .] 22170 22310 .. 22166 22310 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (176906 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.05 # Mc/sec: 594.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (176906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7447.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (176906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6227.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (176906 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 707.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (176906 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2759.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (176906 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1314.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000111.1749.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1808.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000751.1750.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (176492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 458.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (176492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2753.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (176492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1853.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (176492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6212.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (176492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (176492 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7430.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (176492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000121.1751.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (176492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (107046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3768.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (107046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (107046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (107046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (107046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1123.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (107046 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1669.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (107046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000321.1752.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (107046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (56772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (56772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (56772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (56772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (56772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (56772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (56772 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000631.1753.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (56772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (81204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3418.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (81204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1031.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (81204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (81204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (81204 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (81204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2858.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (81204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JABWDG0100000441.1754.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (81204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (194900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (194900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2475.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (194900 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3040.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (194900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8205.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (194900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2046.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (194900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3274.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (194900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946191.1755.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (194900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6860.48 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7292 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 306.99 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 92.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946181.1756.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 256.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8249574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.06u 0.01s 00:00:00.06 Elapsed: 00:00:00.05 # Mc/sec: 4289.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8249574 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.39u 0.03s 00:00:00.42 Elapsed: 00:00:00.17 # Mc/sec: 20429.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8249574 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.34u 0.04s 00:00:00.38 Elapsed: 00:00:00.17 # Mc/sec: 7570.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8249574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.08 # Mc/sec: 13096.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8249574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.20u 0.01s 00:00:00.21 Elapsed: 00:00:00.08 # Mc/sec: 36298.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-41 131.0 4.0 4.2e-22 67.7 1.3 3.0 2 frame_5 1.4e-23 72.5 0.0 5.4e-23 70.6 0.0 1.9 1 frame_2 9e-23 69.9 0.0 1.7e-22 69.0 0.0 1.4 1 frame_1 1.4e-17 53.0 0.0 2.2e-17 52.4 0.0 1.3 1 frame_6 9.4e-12 34.0 0.1 2.1e-11 32.9 0.1 1.6 1 frame_4 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.0 0.1 2e-20 2.3e-20 2 167 .. 583898 584077 .. 583897 584078 .. 0.91 2 ! 67.7 1.3 3.5e-22 4.2e-22 1 168 [] 591791 591935 .. 591791 591935 .. 0.90 >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.6 0.0 4.5e-23 5.4e-23 2 168 .] 195810 195950 .. 195809 195950 .. 0.86 >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.0 0.0 1.4e-22 1.7e-22 2 168 .] 98254 98391 .. 98253 98391 .. 0.90 >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.4 0.0 1.8e-17 2.2e-17 2 168 .] 379749 379915 .. 379748 379915 .. 0.88 >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.9 0.1 1.7e-11 2.1e-11 3 168 .] 837117 837259 .. 837115 837259 .. 0.79 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8249574 residues searched) Passed MSV filter: 5 (0.833333); expected 0.1 (0.02) Passed bias filter: 5 (0.833333); expected 0.1 (0.02) Passed Vit filter: 5 (0.833333); expected 0.0 (0.001) Passed Fwd filter: 5 (0.833333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 6.11u 0.17s 00:00:06.28 Elapsed: 00:00:01.32 # Mc/sec: 1049.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8249574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.06u 0.01s 00:00:00.06 Elapsed: 00:00:00.05 # Mc/sec: 6599.66 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8249574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.08u 0.02s 00:00:00.10 Elapsed: 00:00:00.05 # Mc/sec: 17324.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1319.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1180.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1314.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1175.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1315.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1315.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40860 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1315.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40860 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40860 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946211.1757.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (347570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1390.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (347570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 2919.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (347570 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 7316.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (347570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6117.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (347570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (347570 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5422.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (347570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT5946201.1758.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (347570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (262058 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1048.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (262058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (262058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (262058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11032.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (262058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2751.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (262058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3328.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (262058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000101.175.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (262058 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4088.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8784350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.07u 0.01s 00:00:00.08 Elapsed: 00:00:00.05 # Mc/sec: 4567.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8784350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.45u 0.02s 00:00:00.47 Elapsed: 00:00:00.13 # Mc/sec: 23785.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-23 70.1 0.0 3.4e-22 68.0 0.0 1.9 1 frame_6 3.4e-17 51.7 0.0 5.2e-17 51.1 0.0 1.3 1 frame_2 1.9e-10 29.8 0.0 4.4e-09 25.3 0.0 2.5 1 frame_5 Domain annotation for each sequence: >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.0 0.0 1.7e-22 3.4e-22 1 168 [] 1042476 1042614 .. 1042476 1042614 .. 0.90 >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.1 0.0 2.6e-17 5.2e-17 2 168 .] 1336726 1336888 .. 1336725 1336888 .. 0.89 >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.3 0.0 2.2e-09 4.4e-09 5 168 .] 1070912 1071052 .. 1070908 1071052 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8784350 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 3 (0.5); expected 0.1 (0.02) Passed Vit filter: 3 (0.5); expected 0.0 (0.001) Passed Fwd filter: 3 (0.5); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 4.10u 0.12s 00:00:04.22 Elapsed: 00:00:01.44 # Mc/sec: 1024.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8784350 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.93u 0.06s 00:00:00.99 Elapsed: 00:00:00.64 # Mc/sec: 2141.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8784350 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.49u 0.02s 00:00:00.51 Elapsed: 00:00:00.19 # Mc/sec: 19464.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8784350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.08 # Mc/sec: 11529.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8784350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.09u 0.02s 00:00:00.11 Elapsed: 00:00:00.08 # Mc/sec: 4392.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8784350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.14u 0.01s 00:00:00.15 Elapsed: 00:00:00.08 # Mc/sec: 13945.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1179.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1314.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_LT9064591.1759.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (368890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3873.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (368890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (368890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 959.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (368890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6197.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (368890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 12984.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (368890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5754.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (368890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 7765.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000031.1760.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (368890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4684.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (451000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (451000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5727.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (451000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 9493.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (451000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7576.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (451000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7035.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (451000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 15875.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (451000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4735.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000201.1761.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (451000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1172.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-24 74.4 0.0 5.4e-24 73.9 0.0 1.3 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.9 0.0 8.9e-25 5.4e-24 2 167 .. 75 254 .. 74 255 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (85814 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 480.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (85814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (85814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1089.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (85814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (85814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 223.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (85814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 901.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (85814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3612.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (85814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 692.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (21516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 619.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000161.1762.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (223624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3488.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (223624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (223624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 581.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (223624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2348.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (223624 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 894.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (223624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (223624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7871.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000071.1763.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (223624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9414.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (185252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (185252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (185252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2352.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (185252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7799.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (185252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1945.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (185252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6520.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (185252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3112.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000091.1764.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (185252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (1123430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4493.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-33 104.1 15.8 2.5e-33 104.1 15.8 8.6 1 frame_6 Domain annotation for each sequence: >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 104.1 15.8 4.2e-34 2.5e-33 1 155 [. 74981 75159 .. 74981 75160 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (1123430 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.18u 0.00s 00:00:00.18 Elapsed: 00:00:00.19 # Mc/sec: 922.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (1123430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00.05 # Mc/sec: 9459.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (1123430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 13181.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (1123430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2920.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (1123430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5898.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (1123430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 7133.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (1123430 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 9436.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000021.1765.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 143.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (209352 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4406.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (209352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7369.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (209352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3517.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (209352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3265.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (209352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (209352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (209352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2198.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000051.1766.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (209352 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (1424992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.04 # Mc/sec: 12539.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (1424992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 1852.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (1424992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.01 # Mc/sec: 14962.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (1424992 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.04 # Mc/sec: 5557.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (1424992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 11969.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (1424992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5699.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-12 35.7 2.8 2.3e-12 35.0 2.8 1.2 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.0 2.8 3.9e-13 2.3e-12 56 142 .. 92847 92930 .. 92831 92943 .. 0.87 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (1424992 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.57u 0.01s 00:00:00.57 Elapsed: 00:00:00.56 # Mc/sec: 1052.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000011.1767.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (1424992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 18097.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (1008118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10585.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (1008118 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.05 # Mc/sec: 3387.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (1008118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6401.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (1008118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2621.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (1008118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 11828.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (1008118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4032.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (1008118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 5242.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000181.1768.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (1008118 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.10u 0.00s 00:00:00.10 Elapsed: 00:00:00.10 # Mc/sec: 4244.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (181312 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2828.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (181312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7633.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (181312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (181312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 471.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (181312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (181312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (181312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000161.176.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (181312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (258358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5438.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (258358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (258358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (258358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-18 56.7 0.0 1.5e-18 56.2 0.0 1.2 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.2 0.0 2.4e-19 1.5e-18 2 168 .] 3054 3216 .. 3053 3216 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (258358 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00.04 # Mc/sec: 1085.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (258358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (258358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4030.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (258358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3281.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (39288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1265.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (39288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1131.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000061.1769.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (39288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1265.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (447976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 18859.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-25 78.3 0.0 1.8e-23 72.1 0.0 2.4 1 frame_5 2.7e-18 55.3 0.0 3.7e-18 54.9 0.0 1.2 1 frame_3 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.1 0.0 6.1e-24 1.8e-23 1 168 [] 57821 57959 .. 57821 57959 .. 0.90 >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.9 0.0 1.2e-18 3.7e-18 2 167 .. 16395 16563 .. 16394 16564 .. 0.95 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (447976 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 2 (0.333333); expected 0.0 (0.001) Passed Fwd filter: 2 (0.333333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.17 # Mc/sec: 442.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (447976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (447976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 15768.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (447976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4703.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (447976 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 3494.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (447976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5689.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (447976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1164.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1320.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1180.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000221.1770.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1175.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (450336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 15851.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (450336 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7025.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (450336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9479.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (450336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5719.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (450336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (450336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1801.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (450336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000211.1771.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (450336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7565.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (171934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (171934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2682.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (171934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (171934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2183.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (171934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2888.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (171934 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6052.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (171934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000111.1772.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (171934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1805.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (173832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2207.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (173832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (173832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6118.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (173832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (173832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7318.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (173832 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (173832 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000101.1773.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (173832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2920.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (456664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7671.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (456664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1826.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (456664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (456664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 8037.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (456664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4794.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (456664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 9612.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (456664 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3561.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000171.1774.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (456664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5799.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (317238 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 11166.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (317238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5329.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (317238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (317238 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1268.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (317238 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 6677.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (317238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 824.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (317238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000041.1775.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (317238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (483470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1933.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (483470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (483470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8122.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (483470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6140.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (483470 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 5672.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (483470 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7542.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (483470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10177.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000141.1776.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (483470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (116128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1474.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (116128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (116128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4087.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (116128 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (116128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 301.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (116128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (116128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4888.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000121.1777.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (116128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (92378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (92378 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (92378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3251.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (92378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (92378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (92378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (92378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 969.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000151.1778.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (92378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (135028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (135028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (135028 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 540.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (135028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (135028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (135028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5684.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (135028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000241.177.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (135028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (443128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1772.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (443128 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 5199.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (443128 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.13u 0.00s 00:00:00.13 Elapsed: 00:00:00.13 # Mc/sec: 1435.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (443128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1152.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (443128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5627.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (443128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4652.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (443128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7444.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000191.1779.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (443128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6912.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (88050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3099.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (88050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (88050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (88050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (88050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (88050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (88050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000131.1780.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (88050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (205398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7230.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (205398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (205398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 534.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (205398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8647.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.7e-12 34.1 0.0 9.8e-11 30.7 0.0 2.1 1 frame_6 Domain annotation for each sequence: >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.7 0.0 1.6e-11 9.8e-11 5 168 .] 9905 10045 .. 9901 10045 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (205398 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.05 # Mc/sec: 690.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (205398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (205398 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3204.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (205398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_UATG010000081.1781.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (120764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4250.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (120764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (120764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1533.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (120764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (120764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2028.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (120764 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1883.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (120764 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 483.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000281.178.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (120764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (378954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 15953.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (378954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (378954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6366.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (378954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 13339.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (378954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3979.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (378954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (378954 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5911.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033711.17.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (378954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (82982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1394.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (82982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3493.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (82982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (82982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (82982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (82982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (82982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2920.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000341.179.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (82982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (155280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2422.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (155280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (155280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (155280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1630.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (155280 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 2732.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (155280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-24 73.6 0.0 1e-23 73.0 0.0 1.3 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.0 0.0 1.7e-24 1e-23 2 167 .. 11496 11675 .. 11495 11676 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (155280 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.05 # Mc/sec: 521.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (155280 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6537.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000201.180.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-13 38.9 3.9 1.6e-13 38.8 2.3 1.7 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.8 2.3 2.6e-14 1.6e-13 54 142 .. 13780 13865 .. 13759 13878 .. 0.84 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (220960 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.13u 0.00s 00:00:00.13 Elapsed: 00:00:00.13 # Mc/sec: 715.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (220960 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (220960 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (220960 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (220960 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3712.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (220960 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3446.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (220960 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000131.181.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (220960 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 742.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000561.182.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 221.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (238370 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3718.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (238370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10035.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (238370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 619.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (238370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (238370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2502.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (238370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (238370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000111.183.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (238370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3027.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (39818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (39818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (39818 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (39818 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (39818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 505.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (39818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 418.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (39818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1676.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000491.184.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (39818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (486652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 8565.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (486652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5109.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (486652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6180.48 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (486652 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3795.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (486652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8175.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (486652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1946.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (486652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1265.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000051.185.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (486652 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 20488.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29602 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 461.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 375.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 118.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000511.186.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (135240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1420.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (135240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 351.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (135240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4760.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (135240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (135240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (135240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (135240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1717.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000231.187.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (135240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2272.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (41330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (41330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (41330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 524.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (41330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (41330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 433.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (41330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (41330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000471.188.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (41330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (384022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (384022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1536.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (384022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-23 70.6 0.0 7.8e-23 70.1 0.0 1.2 1 frame_3 1.9e-21 65.6 0.0 2.7e-21 65.1 0.0 1.2 1 frame_4 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.1 0.0 2.6e-23 7.8e-23 2 168 .] 25208 25375 .. 25207 25375 .. 0.91 >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.1 0.0 9.1e-22 2.7e-21 2 168 .] 29541 29717 .. 29540 29717 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (384022 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 2 (0.333333); expected 0.0 (0.001) Passed Fwd filter: 2 (0.333333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.14u 0.00s 00:00:00.14 Elapsed: 00:00:00.13 # Mc/sec: 496.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (384022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4032.23 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (384022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 8083.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (384022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13517.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (384022 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 2995.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40998 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40998 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1180.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40998 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033701.18.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 273.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 758.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.7e-20 60.3 0.0 1e-19 60.0 0.0 1.1 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.0 0.0 1.7e-20 1e-19 2 168 .] 1706 1868 .. 1705 1868 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21536 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 361.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21536 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 335.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000541.189.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (21530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (67580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (67580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (67580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (67580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (67580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (67580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (67580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 709.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000401.190.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (67580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2378.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (87520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (87520 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (87520 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (87520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (87520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 918.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (87520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (87520 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000321.191.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (87520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 350.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (286438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1145.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (286438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 744.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (286438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3637.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (286438 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4468.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (286438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (286438 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.06 # Mc/sec: 2009.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (286438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10082.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000091.192.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (286438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4812.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (236490 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 4978.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (236490 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 614.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (236490 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8324.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (236490 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3003.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (236490 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 945.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (236490 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (236490 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3973.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000121.193.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (236490 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (72452 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 1275.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (72452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3050.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (72452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (72452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (72452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (72452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (72452 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000371.194.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (72452 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (118294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (118294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1242.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (118294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (118294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (118294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1987.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (118294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 307.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (118294 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1845.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000291.195.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (118294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4163.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (151902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (151902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2369.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (151902 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5346.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (151902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1929.16 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (151902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (151902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (151902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000211.196.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (151902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (80332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (80332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (80332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (80332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3381.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (80332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (80332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2827.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (80332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000351.197.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (80332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (142478 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 569.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (142478 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5998.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (142478 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (142478 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (142478 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (142478 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2222.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (142478 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000221.198.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (142478 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (62366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2195.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (62366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (62366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (62366 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (62366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (62366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (62366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945991.1.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (62366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2625.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 246.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 186.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033621.19.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (88554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (88554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3728.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (88554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1487.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (88554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1124.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (88554 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3117.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (88554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 354.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (88554 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1381.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000311.199.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (88554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (289318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (289318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3674.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (289318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1157.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (289318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 10183.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (289318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4860.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (289318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (289318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 752.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000081.200.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (289318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (132942 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2073.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (132942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2233.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (132942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 345.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (132942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1688.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (132942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4679.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (132942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (132942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5596.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000261.201.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (132942 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 531.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (134572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (134572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5665.48 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (134572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (134572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (134572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (134572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (134572 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000251.202.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (134572 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2099.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (69548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2927.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (69548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (69548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2448.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (69548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 730.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (69548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (69548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (69548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 278.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIG010000381.203.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (69548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 883.26 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-23 72.3 0.1 4.6e-22 67.6 0.1 2.2 1 frame_6 Domain annotation for each sequence: >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.6 0.1 7.7e-23 4.6e-22 1 168 [] 82024 82162 .. 82024 82162 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (493582 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.09u 0.01s 00:00:00.10 Elapsed: 00:00:00.09 # Mc/sec: 921.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (493582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 20779.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (493582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (493582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1283.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (493582 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7699.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (493582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1974.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (493582 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3134.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (493582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 17374.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 690.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (21436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 617.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000021.204.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000631.205.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (50466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 640.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (50466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2124.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (50466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 847.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (50466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (50466 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1776.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (50466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (50466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000491.206.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (50466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 131.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (149728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (149728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (149728 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2335.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (149728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (149728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6303.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (149728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (149728 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2515.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000271.207.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (149728 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 2635.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (259010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (259010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5452.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (259010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2719.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (259010 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4040.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (259010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9117.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (259010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1036.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (259010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4351.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000111.208.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (259010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3289.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (155456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 404.19 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (155456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (155456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2425.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (155456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6544.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (155456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (155456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (155456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-22 68.7 0.0 3e-22 68.2 0.0 1.2 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.2 0.0 4.9e-23 3e-22 2 168 .] 25612 25789 .. 25611 25789 .. 0.86 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (155456 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 # Mc/sec: 652.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (21782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 627.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000271.20.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21782 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (113322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4770.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (113322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1439.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (113322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1903.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (113322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1189.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (113322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1767.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (113322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (113322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000321.209.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (113322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (195344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6876.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (195344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (195344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (195344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (195344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2051.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (195344 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3047.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (195344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000161.210.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (195344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8223.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (63488 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2672.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (63488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 165.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (63488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 990.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (63488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (63488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2234.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (63488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (63488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000461.211.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (63488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (60892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (60892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 949.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (60892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (60892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (60892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (60892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (60892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000471.212.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (60892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2563.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 568.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 679.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 169.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000601.213.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (165110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2773.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (165110 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2575.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (165110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2096.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (165110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (165110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (165110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 429.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (165110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5811.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000241.214.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (165110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6951.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (96750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1228.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (96750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1015.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (96750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (96750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (96750 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3405.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (96750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.4e-35 109.8 17.9 4.4e-35 109.8 17.9 2.1 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 109.8 17.9 7.4e-36 4.4e-35 1 155 [. 1635 1813 .. 1635 1814 .. 0.93 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (96750 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.03 # Mc/sec: 503.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (96750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 387.00 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000391.215.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (30870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (104528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1756.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (104528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 418.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (104528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (104528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (104528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3679.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (104528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 271.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (104528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000351.216.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (104528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4400.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (270722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 703.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (270722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11397.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (270722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2842.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (270722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3438.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (270722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4548.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (270722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9529.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (270722 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4223.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000101.217.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (270722 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1082.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (150300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (150300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (150300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (150300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5290.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (150300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (150300 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2344.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (150300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1578.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000261.218.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (150300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (448102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 18865.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (448102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5690.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (448102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1165.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (448102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 15773.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (448102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (448102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4705.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (448102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3495.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125801.21.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (448102 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3764.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (146176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (146176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (146176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2455.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (146176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1534.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (146176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (146176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6154.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (146176 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1856.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000281.219.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (146176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31012 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31012 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31012 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 124.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31012 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31012 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31012 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 483.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31012 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000571.220.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31012 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (234746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (234746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3943.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (234746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (234746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8263.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (234746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (234746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (234746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000151.221.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (234746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (284874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1139.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (284874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10027.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (284874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 740.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (284874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2991.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (284874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (284874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (284874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 11993.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000081.222.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (284874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 141.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 91.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 592.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35274 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1485.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000551.223.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (235096 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3667.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (235096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2468.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (235096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3949.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (235096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8275.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (235096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2985.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (235096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9897.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (235096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000141.224.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (235096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 940.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (76218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1280.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (76218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (76218 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3208.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (76218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (76218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2682.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (76218 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (76218 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 198.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000421.225.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (76218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (115584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4866.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (115584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (115584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (115584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1941.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (115584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (115584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (115584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1803.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000301.226.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (115584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 462.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (71318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (71318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (71318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (71318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1112.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (71318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3002.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (71318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (71318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000431.227.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (71318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 905.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (428052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7191.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (428052 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9010.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (428052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 7533.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (428052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (428052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1112.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (428052 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1712.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (428052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4494.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000051.228.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (428052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (80462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (80462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1351.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (80462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (80462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (80462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2832.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (80462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 321.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (80462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 209.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000441.22.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (80462 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (111270 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1735.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (111270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1869.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (111270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4684.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (111270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 289.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (111270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (111270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1168.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (111270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1413.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000331.229.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (111270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3916.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (284236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4434.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (284236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10005.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (284236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (284236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5983.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (284236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-22 67.9 0.0 5.5e-22 67.3 0.0 1.3 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.3 0.0 9.2e-23 5.5e-22 2 168 .] 31321 31498 .. 31320 31498 .. 0.86 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (284236 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.06u 0.01s 00:00:00.06 Elapsed: 00:00:00.07 # Mc/sec: 682.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (284236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3609.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (284236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2984.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1182.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000091.230.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1322.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 507.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 37.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 607.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 57.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000611.231.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (37428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (37428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (37428 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (37428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (37428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1575.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (37428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (37428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000541.232.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (37428 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (182676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2849.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (182676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2319.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (182676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7690.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (182676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1918.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (182676 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 474.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (182676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 730.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (182676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3068.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000211.233.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (182676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6430.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (39848 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (39848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (39848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1402.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (39848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1677.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (39848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (39848 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (39848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000531.234.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (39848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 418.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (193666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (193666 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3021.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (193666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8153.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (193666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (193666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (193666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (193666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000171.235.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (193666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2033.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (250284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2627.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (250284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3904.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (250284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8810.00 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (250284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3178.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (250284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (250284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 650.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (250284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10536.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000121.236.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (250284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4204.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (183552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6461.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (183552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1927.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (183552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 477.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (183552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (183552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (183552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2863.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-24 74.4 0.0 5e-24 74.0 0.0 1.2 1 frame_1 1.5e-23 72.4 0.0 2.2e-23 71.8 0.0 1.3 1 frame_2 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.0 0.0 1.7e-24 5e-24 2 168 .] 25642 25809 .. 25641 25809 .. 0.90 >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.8 0.0 7.5e-24 2.2e-23 2 167 .. 7372 7551 .. 7371 7552 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (183552 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 2 (0.333333); expected 0.0 (0.001) Passed Fwd filter: 2 (0.333333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.06u 0.01s 00:00:00.06 Elapsed: 00:00:00.07 # Mc/sec: 440.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (183552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7727.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1182.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40998 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40998 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000201.237.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40998 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42018 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 441.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42018 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1479.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42018 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42018 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 109.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42018 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 655.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42018 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42018 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1768.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000521.238.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42018 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 705.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (125732 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1961.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (125732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2112.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (125732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4425.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (125732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (125732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5293.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (125732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 326.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (125732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1596.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000311.23.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (125732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (104298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (104298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1095.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (104298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (104298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (104298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4390.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (104298 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1627.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (104298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000361.239.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (104298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1752.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42434 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1786.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 661.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 712.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000511.240.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1493.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (523116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6643.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (523116 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.05 # Mc/sec: 3682.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (523116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5492.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (523116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8788.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (523116 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00.05 # Mc/sec: 4404.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (523116 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4080.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (523116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2092.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000011.241.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (523116 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1360.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (67848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (67848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (67848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (67848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (67848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (67848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 861.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (67848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 712.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000441.242.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (67848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1139.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (107370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (107370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4520.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (107370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3779.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (107370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 279.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (107370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (107370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1363.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (107370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000341.243.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (107370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1127.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (184754 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2882.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (184754 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 480.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (184754 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7778.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (184754 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6503.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (184754 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (184754 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1939.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (184754 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000191.244.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (184754 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3103.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (54948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 576.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (54948 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2313.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (54948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (54948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 697.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (54948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (54948 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1934.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (54948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000481.245.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (54948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (113620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3999.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-23 71.3 0.2 7.5e-21 63.6 0.2 2.2 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.6 0.2 1.3e-21 7.5e-21 1 168 [] 12379 12521 .. 12379 12521 .. 0.87 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (113620 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.04 # Mc/sec: 477.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (113620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 295.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (113620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (113620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (113620 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1772.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (113620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (113620 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1193.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1315.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000311.246.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1176.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (156982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1648.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (156982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 627.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (156982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6608.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (156982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 408.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (156982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1993.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (156982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (156982 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000251.247.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (156982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5525.77 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (187440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 487.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (187440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (187440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (187440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7891.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (187440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1968.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (187440 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2924.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (187440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6597.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000181.248.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (187440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3148.99 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (386094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6795.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (386094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1544.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (386094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6486.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (386094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4903.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (386094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (386094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (386094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 5418.19 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000101.24.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (386094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6023.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (67662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1055.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (67662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (67662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (67662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (67662 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (67662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (67662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 859.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000451.249.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (67662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1136.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (88506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 230.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (88506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1124.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (88506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (88506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (88506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1486.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (88506 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (88506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000401.250.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (88506 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000621.251.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (165496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (165496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2780.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (165496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (165496 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 2912.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (165496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (165496 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2581.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (165496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000231.252.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (165496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 430.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (100222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4219.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (100222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 260.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (100222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (100222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1052.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (100222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (100222 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (100222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000381.253.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (100222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3527.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (492814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6258.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (492814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 6915.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (492814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1281.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (492814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 4139.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (492814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1971.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (492814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5174.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (492814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 17347.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000031.254.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (492814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7687.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 756.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 272.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000591.255.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 361.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (306284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (306284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10781.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (306284 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 12894.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (306284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1225.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (306284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4778.03 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (306284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3215.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (306284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 796.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000071.256.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (306284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (466268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3916.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (466268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4895.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (466268 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.03 # Mc/sec: 6543.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (466268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1865.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (466268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 8206.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (466268 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 2424.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (466268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5921.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000041.257.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (466268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1212.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (308072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3912.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (308072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4805.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (308072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 10844.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (308072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5175.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (308072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (308072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (308072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 6484.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000061.258.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (308072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (108986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1384.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (108986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3836.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (108986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4588.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (108986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (108986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 435.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (108986 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (108986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1700.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000361.25.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (108986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 863.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 412.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000581.259.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (129564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 518.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (129564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (129564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (129564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 336.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (129564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (129564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2021.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (129564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5454.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000291.260.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (129564 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (100980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (100980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (100980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (100980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (100980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (100980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (100980 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1575.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000371.261.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (100980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (167032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (167032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 668.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (167032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 434.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (167032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5879.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (167032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7032.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (167032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2605.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (167032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000221.262.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (167032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (49958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 129.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (49958 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (49958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2103.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (49958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 199.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (49958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (49958 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 524.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (49958 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 779.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-13 40.4 0.1 1.4e-09 26.9 0.1 2.2 1 frame_6 Domain annotation for each sequence: >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.9 0.1 2.4e-10 1.4e-09 120 168 .] 3105 3153 .. 3100 3153 .. 0.96 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (49958 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 419.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (38910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (38910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000501.263.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (38910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (82934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1393.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (82934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 215.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (82934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (82934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2919.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (82934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3491.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (82934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (82934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000411.264.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (82934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1293.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (242964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 971.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (242964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 631.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (242964 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3790.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (242964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2551.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (242964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 10228.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (242964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4081.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (242964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8552.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000131.265.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (242964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3085.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (32792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (32792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (32792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 131.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (32792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (32792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (32792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (32792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 85.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSSO010000561.266.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (32792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 161.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 50.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000541.267.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12726 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (65888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 691.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (65888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (65888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (65888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1106.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (65888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 836.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (65888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (65888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000421.268.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (65888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2773.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 841.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 401.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1006.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000551.26.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (106688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (106688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (106688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1354.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (106688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (106688 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (106688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4491.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (106688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000291.269.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (106688 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (707386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7427.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (707386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 12449.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (707386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.02 # Mc/sec: 4491.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (707386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2829.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (707386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (707386 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 2971.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (707386 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 3678.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000011.270.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (707386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 9926.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (259732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (259732 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5467.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (259732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4363.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (259732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (259732 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1038.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (259732 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4051.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (259732 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9142.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000111.271.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (259732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3298.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (686796 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 12087.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (686796 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 892.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (686796 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8722.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (686796 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7211.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (686796 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2747.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (686796 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.04 # Mc/sec: 7228.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (686796 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.03 # Mc/sec: 3571.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000021.272.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (686796 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11538.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (82064 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2888.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (82064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3454.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (82064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1280.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (82064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 213.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (82064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (82064 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 328.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (82064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000351.273.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (82064 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (82004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (82004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (82004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1377.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (82004 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (82004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (82004 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3452.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (82004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000361.274.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (82004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (124174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2086.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (124174 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (124174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (124174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5227.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (124174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1577.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (124174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4370.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (124174 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000271.275.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (124174 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (168366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 673.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (168366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (168366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (168366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (168366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (168366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1767.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (168366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7088.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000191.276.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (168366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2138.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (32632 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (32632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 548.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (32632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (32632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 414.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (32632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (32632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1373.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (32632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000491.277.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (32632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 84.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (123176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4335.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (123176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5185.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (123176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (123176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (123176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (123176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2069.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (123176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 492.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000281.278.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (123176 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (157988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2006.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (157988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 410.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (157988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (157988 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (157988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6651.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (157988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5561.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (157988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 631.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-24 74.6 0.0 4.3e-24 74.2 0.0 1.2 1 frame_2 2.7e-23 71.6 0.0 4e-23 71.0 0.0 1.2 1 frame_3 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.2 0.0 1.4e-24 4.3e-24 2 168 .] 25692 25859 .. 25691 25859 .. 0.90 >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.0 0.0 1.3e-23 4e-23 2 167 .. 7506 7685 .. 7505 7686 .. 0.93 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (157988 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 2 (0.333333); expected 0.0 (0.001) Passed Fwd filter: 2 (0.333333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00.06 # Mc/sec: 442.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (23834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 767.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (23834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (23834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000251.27.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (222164 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (222164 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3465.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (222164 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (222164 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2332.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (222164 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3732.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (222164 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (222164 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 9353.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000131.279.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (222164 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7820.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (83452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (83452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1401.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (83452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (83452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1059.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (83452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (83452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (83452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000341.280.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (83452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (85804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1089.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (85804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (85804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3612.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (85804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (85804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (85804 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (85804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000331.281.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (85804 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (69080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2908.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (69080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 276.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (69080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (69080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (69080 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (69080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (69080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000401.282.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (69080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (310136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3938.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (310136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (310136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (310136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3256.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (310136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10916.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (310136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1240.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (310136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 2605.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000081.283.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (310136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 13056.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (153434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6459.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (153434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (153434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (153434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 398.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (153434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2393.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (153434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1948.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (153434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000201.284.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (153434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 573.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000531.285.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19538 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 328.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000521.286.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (69336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (69336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1164.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (69336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 180.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (69336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 880.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (69336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (69336 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (69336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 277.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000391.287.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (69336 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2440.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (43890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (43890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (43890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (43890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (43890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 114.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (43890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (43890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1544.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000441.288.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (43890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1847.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (208406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7335.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (208406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (208406 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 541.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (208406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2646.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (208406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (208406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2188.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (208406 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8773.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000171.28.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (208406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3501.22 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (343594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 893.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (343594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4363.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (343594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1374.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (343594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 12094.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (343594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3607.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (343594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5360.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (343594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 7232.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000061.289.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (343594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5772.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (106186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 276.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (106186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (106186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (106186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1783.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (106186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (106186 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1656.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (106186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000301.290.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (106186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (66446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 172.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (66446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2797.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (66446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 697.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (66446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 843.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (66446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 265.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (66446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (66446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000411.291.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (66446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2338.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (584672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6139.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (584672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2338.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (584672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9822.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (584672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (584672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7425.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (584672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9120.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (584672 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00.06 # Mc/sec: 4102.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000031.292.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (584672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 20580.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (132970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (132970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2233.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (132970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (132970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (132970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1688.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (132970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (132970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000261.293.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (132970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5598.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (327838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (327838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (327838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5114.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (327838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (327838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (327838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13801.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (327838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5507.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000071.294.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (327838 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 # Mc/sec: 2884.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (75190 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (75190 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (75190 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (75190 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (75190 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 195.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (75190 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (75190 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000381.295.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (75190 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (170048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 442.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (170048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (170048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5985.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (170048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7159.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (170048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2856.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (170048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2159.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (170048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 680.19 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.6e-34 106.8 15.8 3.6e-34 106.8 15.8 2.9 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 106.8 15.8 5.9e-35 3.6e-34 1 155 [. 18575 18753 .. 18575 18754 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (170048 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 663.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000171.296.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (104364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 417.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (104364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1095.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (104364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1325.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (104364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (104364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1753.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (104364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 271.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (104364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000311.297.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (104364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4393.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (273902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3478.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (273902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (273902 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4820.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (273902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 712.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (273902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (273902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4272.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (273902 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11531.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000091.298.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (273902 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (912524 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5794.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-34 106.8 19.9 3.7e-34 106.8 19.9 10.6 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 106.8 19.9 6.2e-35 3.7e-34 2 155 .. 94523 94700 .. 94522 94701 .. 0.93 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (912524 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.20 # Mc/sec: 711.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (912524 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 1186.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (912524 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4790.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (912524 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 1825.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (912524 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.06 # Mc/sec: 6402.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (912524 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 7665.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (912524 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 10706.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945971.2.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1774.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 708.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1483.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 109.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000501.29.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 168.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (58306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (58306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (58306 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (58306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (58306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (58306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 979.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (58306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2454.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000431.299.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (58306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (134988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 350.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (134988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 539.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (134988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1714.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-24 73.8 0.0 8.6e-24 73.2 0.0 1.3 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.2 0.0 1.4e-24 8.6e-24 2 167 .. 14272 14451 .. 14271 14452 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (134988 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.02 # Mc/sec: 1133.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (134988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (134988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (134988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5682.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (134988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4751.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000251.300.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (141634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1798.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (141634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 368.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (141634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (141634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4985.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (141634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2379.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (141634 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (141634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000241.301.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (141634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-19 58.5 0.0 4.1e-19 58.0 0.0 1.3 1 frame_6 Domain annotation for each sequence: >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.0 0.0 6.8e-20 4.1e-19 2 168 .] 3434 3596 .. 3433 3596 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (76576 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 428.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (76576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 972.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (76576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (76576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (76576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 306.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (76576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2695.48 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (76576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3223.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (76576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1194.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000371.302.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (142540 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (142540 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (142540 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (142540 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (142540 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6000.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (142540 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (142540 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2223.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000231.303.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (142540 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (39286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (39286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (39286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (39286 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (39286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (39286 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 102.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (39286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000461.304.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (39286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1653.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24848 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 387.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24848 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 874.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24848 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 260.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000501.305.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 315.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (43414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (43414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (43414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (43414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (43414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (43414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (43414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 173.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000451.306.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (43414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (172464 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2690.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (172464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (172464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2897.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (172464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6070.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (172464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7260.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (172464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (172464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 689.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000161.307.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (172464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1810.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (143178 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5039.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (143178 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1818.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (143178 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2233.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (143178 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (143178 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (143178 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6027.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (143178 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000221.308.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (143178 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (484838 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3781.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (484838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5090.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (484838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1939.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (484838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8145.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (484838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6157.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (484838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (484838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 17066.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000061.30.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (484838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 10205.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (493898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10396.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (493898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1284.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (493898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 8692.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (493898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (493898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (493898 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3852.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (493898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000051.309.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (493898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5185.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (550730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.03 # Mc/sec: 7728.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (550730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1431.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (550730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 19385.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (550730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2202.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (550730 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 4295.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (550730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5782.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (550730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6994.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-25 77.5 0.0 2.1e-23 72.0 0.0 2.2 1 frame_3 3.2e-18 55.1 0.0 4.6e-18 54.6 0.0 1.2 1 frame_4 4.3e-11 31.9 0.0 2.7e-10 29.3 0.0 2.1 1 frame_2 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.0 0.0 1e-23 2.1e-23 1 168 [] 57205 57343 .. 57205 57343 .. 0.90 >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.6 0.0 2.3e-18 4.6e-18 2 167 .. 34137 34305 .. 34136 34306 .. 0.95 >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.3 0.0 1.3e-10 2.7e-10 5 168 .] 83962 84102 .. 83958 84102 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (550730 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 3 (0.5); expected 0.1 (0.02) Passed Vit filter: 3 (0.5); expected 0.0 (0.001) Passed Fwd filter: 3 (0.5); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.25u 0.01s 00:00:00.26 Elapsed: 00:00:00.27 # Mc/sec: 342.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1320.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1314.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000041.310.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 441.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 369.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 27.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000551.311.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 250.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 110.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 18.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000571.312.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (176830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (176830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 459.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (176830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6224.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (176830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2970.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (176830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3722.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (176830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (176830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000151.313.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (176830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2245.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 91.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1487.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 448.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 141.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000481.314.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1244.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (243352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2555.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (243352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (243352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3090.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (243352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10245.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (243352 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3796.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (243352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8565.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (243352 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 973.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000121.315.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (243352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (271406 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 2116.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (271406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9553.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (271406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (271406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4559.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (271406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2849.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (271406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3446.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (271406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 705.66 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000101.316.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (271406 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 # Mc/sec: 2856.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (151284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1588.48 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (151284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (151284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2360.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (151284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 605.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (151284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (151284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1921.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (151284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000211.317.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (151284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6369.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 341.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000511.318.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 270.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 219.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 45.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 181.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000591.31.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (208968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2194.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (208968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8797.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (208968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3510.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (208968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (208968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2653.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (208968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (208968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000141.319.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (208968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7355.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 98.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 271.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000561.320.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (86748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (86748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (86748 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (86748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (86748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1457.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (86748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3652.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (86748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 225.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000321.321.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (86748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (169594 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2645.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (169594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (169594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2153.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (169594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (169594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (169594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (169594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000181.322.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (169594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5969.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (37730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1588.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (37730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (37730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1328.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (37730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (37730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (37730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (37730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYC010000471.323.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (37730 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (208342 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3250.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (208342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2187.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (208342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (208342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2645.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (208342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 833.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (208342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (208342 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8771.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000111.324.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (208342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3500.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (161922 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (161922 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5699.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (161922 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2525.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (161922 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2720.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (161922 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6816.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (161922 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (161922 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1700.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000241.325.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (161922 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2056.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 445.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000701.326.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18230 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 47.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 767.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000641.327.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18230 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (140296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 561.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (140296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (140296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (140296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (140296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (140296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (140296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1473.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000271.328.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (140296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2188.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (135140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5689.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (135140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1716.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (135140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 351.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (135140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1418.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (135140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (135140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2108.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (135140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4756.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000291.32.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (135140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (110270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (110270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (110270 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4642.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (110270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 441.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (110270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1157.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (110270 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1400.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (110270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000301.329.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (110270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1720.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (108830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (108830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (108830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (108830 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1697.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (108830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4581.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (108830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (108830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000321.330.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (108830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (491676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8260.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (491676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1966.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (491676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 8653.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (491676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6244.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (491676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1278.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (491676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5162.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (491676 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10349.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000041.331.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (491676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7670.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (60548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1017.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (60548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (60548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 242.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (60548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 635.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (60548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (60548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2131.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (60548 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 944.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000471.332.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (60548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2549.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 401.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 332.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31628 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 493.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1331.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000591.333.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (109866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3867.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (109866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (109866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (109866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (109866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (109866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (109866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4625.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000311.334.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (109866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (99484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1263.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (99484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (99484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (99484 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1671.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (99484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (99484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3501.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (99484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000361.335.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (99484 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1551.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 471.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4967.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1840.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 306.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000291.336.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4153.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (37342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (37342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (37342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (37342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (37342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (37342 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (37342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000571.337.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (37342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (62108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (62108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (62108 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (62108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1043.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (62108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 788.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (62108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (62108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000461.338.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (62108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (116366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 465.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (116366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (116366 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (116366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 302.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (116366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (116366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1954.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (116366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4899.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000341.33.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (116366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (59802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (59802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1004.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (59802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (59802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (59802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 627.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (59802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2517.66 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (59802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000481.339.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (59802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (54854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (54854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (54854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (54854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (54854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (54854 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1930.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (54854 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2309.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000511.340.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (54854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 575.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (55264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (55264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (55264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (55264 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 580.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (55264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (55264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1945.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (55264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000501.341.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (55264 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (175636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (175636 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (175636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2950.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (175636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (175636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (175636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (175636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7394.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000181.342.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (175636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 250.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000661.343.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 41.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 287.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000651.344.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (89286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (89286 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (89286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (89286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (89286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1500.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (89286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (89286 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1392.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000401.345.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (89286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (171852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2887.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (171852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (171852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (171852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6049.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (171852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7234.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (171852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (171852 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000201.346.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (171852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2182.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (106334 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1786.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (106334 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4476.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (106334 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 276.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (106334 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (106334 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (106334 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1658.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (106334 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1350.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000331.347.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (106334 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (95062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1597.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (95062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (95062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4002.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (95062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (95062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (95062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (95062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3346.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000381.348.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (95062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (515734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 18153.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (515734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5415.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (515734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2062.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (515734 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.11u 0.00s 00:00:00.11 Elapsed: 00:00:00.11 # Mc/sec: 1973.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (515734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4022.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (515734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8664.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (515734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1340.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125791.34.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (515734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6549.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (198824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2525.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (198824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3340.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (198824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (198824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.02 # Mc/sec: 4185.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (198824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3101.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (198824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (198824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 795.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000121.349.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (198824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6998.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (70368 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 281.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (70368 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 738.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (70368 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (70368 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2476.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (70368 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (70368 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (70368 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000451.350.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (70368 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1287.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000581.351.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36588 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 146.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (576602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9686.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (576602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6054.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (576602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1499.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (576602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 10148.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (576602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 12137.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (576602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7322.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (576602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2306.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000021.352.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (576602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8994.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (50532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1778.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (50532 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (50532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (50532 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (50532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2127.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (50532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (50532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 848.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000531.353.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (50532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21154 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 330.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 355.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000621.354.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21154 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 744.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (183940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (183940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2869.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (183940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3090.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (183940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 478.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (183940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2336.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (183940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6474.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (183940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000151.355.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (183940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 735.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (86754 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (86754 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (86754 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1101.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (86754 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1457.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (86754 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 225.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (86754 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (86754 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000431.356.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (86754 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3652.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (82404 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2900.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (82404 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 329.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (82404 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (82404 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 214.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (82404 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (82404 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (82404 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1384.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000441.357.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (82404 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 865.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (148268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (148268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (148268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1883.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (148268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6242.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (148268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (148268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (148268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000261.358.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (148268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (244994 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (244994 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 8623.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (244994 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 979.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (244994 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10314.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (244994 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 636.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (244994 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2572.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (244994 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 1910.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000131.35.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (244994 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4115.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 19.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 30.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 96.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7570 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7570 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000731.359.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7570 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (175804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3700.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (175804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1845.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (175804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (175804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2742.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (175804 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 457.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (175804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2232.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (175804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 703.22 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000171.360.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (175804 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6188.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (58376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (58376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (58376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (58376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (58376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (58376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (58376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000491.361.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (58376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1804.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 544.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42862 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 171.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42862 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000551.362.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1508.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (87432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (87432 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (87432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 349.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (87432 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 1538.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (87432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1110.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (87432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (87432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3680.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-13 38.8 0.1 2.5e-09 26.2 0.1 2.2 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.2 0.1 4.1e-10 2.5e-09 120 168 .] 9945 9993 .. 9939 9993 .. 0.96 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (87432 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 734.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1297.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000411.363.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (163916 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6900.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.9e-47 148.1 0.0 4.4e-24 74.1 0.0 2.2 2 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.0 0.0 3.3e-24 2e-23 2 167 .. 7325 7504 .. 7324 7505 .. 0.94 2 ! 74.1 0.0 7.4e-25 4.4e-24 2 168 .] 25541 25708 .. 25540 25708 .. 0.90 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (163916 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.07 # Mc/sec: 393.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (163916 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 655.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (163916 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 426.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (163916 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2557.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (163916 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (163916 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5769.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (163916 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (30668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 987.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (30668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (30668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 883.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1322.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1322.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000231.364.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (235080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2985.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (235080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (235080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2468.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (235080 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3667.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (235080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9896.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (235080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3949.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (235080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000081.365.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (235080 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 8274.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (51236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 537.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (51236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (51236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (51236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 204.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (51236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (51236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 860.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (51236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 650.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000521.366.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (51236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25184 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 886.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25184 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25184 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1060.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25184 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 319.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25184 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25184 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 65.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25184 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000611.367.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25184 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (187544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 750.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (187544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1969.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (187544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 487.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (187544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3150.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (187544 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2925.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (187544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6601.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (187544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7895.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000131.368.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (187544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (237664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (237664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-34 108.4 17.9 1.1e-34 108.4 17.9 2.9 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 108.4 17.9 1.9e-35 1.1e-34 1 155 [. 18961 19139 .. 18961 19140 .. 0.93 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (237664 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.05 # Mc/sec: 741.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (237664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5002.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-24 74.9 0.1 3.7e-22 67.9 0.1 2.2 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.9 0.1 6.2e-23 3.7e-22 1 168 [] 4473 4611 .. 4473 4611 .. 0.91 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (237664 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00.06 # Mc/sec: 665.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (237664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8365.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (237664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (237664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000141.36.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 79.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 16.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000751.369.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6286 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 159.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 196.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000691.370.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 530.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (100850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (100850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4245.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (100850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (100850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1694.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (100850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (100850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (100850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000351.371.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (100850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (50078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (50078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (50078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (50078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (50078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (50078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1762.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (50078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 130.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000541.372.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (50078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (441300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7413.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (441300 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 3442.14 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (441300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1147.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (441300 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9289.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (441300 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 882.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (441300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 15533.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (441300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4633.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000051.373.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (441300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5604.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (177780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6257.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.1e-23 70.0 0.2 1.2e-20 63.0 0.2 2.2 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.0 0.2 2e-21 1.2e-20 1 168 [] 12370 12512 .. 12370 12512 .. 0.87 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (177780 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.05 # Mc/sec: 597.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (177780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (177780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7484.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (177780 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2773.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (177780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (177780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (177780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1176.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000161.374.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (105752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1110.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (105752 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (105752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (105752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3722.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (105752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 274.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (105752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4452.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (105752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000341.375.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (105752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 161.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15394 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000671.376.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (174574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (174574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (174574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7349.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (174574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2932.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (174574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 698.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (174574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (174574 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3072.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000191.377.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (174574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (94250 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3317.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (94250 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 245.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (94250 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3967.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (94250 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 989.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (94250 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (94250 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 377.00 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (94250 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000391.378.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (94250 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1583.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (156294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 406.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (156294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5501.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (156294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2438.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (156294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6579.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (156294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2625.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (156294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (156294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000261.37.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (156294 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29772 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1047.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29772 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1253.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29772 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 378.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000601.379.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 519.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 248.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 155.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000681.380.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14764 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 230.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (265260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4456.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (265260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 689.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (265260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9337.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (265260 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1061.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (265260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 11167.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (265260 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 1379.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (265260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2785.23 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000071.381.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (265260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 85.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 103.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 136.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 32.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000721.382.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2358.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1950.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7819.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3120.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6538.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000141.383.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 482.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (234688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (234688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 610.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (234688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3661.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (234688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 938.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (234688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3942.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (234688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8261.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (234688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000091.384.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (234688 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9880.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (41710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1755.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (41710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (41710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 529.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (41710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (41710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (41710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (41710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000561.385.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (41710 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (164742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (164742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1729.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (164742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (164742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (164742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (164742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6935.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (164742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 658.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000221.386.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (164742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (213970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3337.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (213970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (213970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (213970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 855.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (213970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3594.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (213970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (213970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7531.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000101.387.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (213970 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 9008.14 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (161662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2053.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (161662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2715.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (161662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (161662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (161662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (161662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (161662 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2521.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000251.388.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (161662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6805.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-11 33.3 0.0 3.6e-10 28.9 0.0 2.3 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.9 0.0 6e-11 3.6e-10 4 168 .] 4044 4185 .. 4041 4185 .. 0.81 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (539924 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.14 # Mc/sec: 647.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (539924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1403.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (539924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8422.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (539924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6857.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (539924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9502.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (539924 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 5682.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (539924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2159.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (539924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5669.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000031.38.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1176.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (121402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (121402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1541.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (121402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (121402 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1893.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (121402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 315.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (121402 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1274.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (121402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000281.389.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (121402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2039.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19486 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19486 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 303.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19486 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19486 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 247.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19486 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 327.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19486 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 204.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19486 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 77.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000631.390.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19486 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 50.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8940 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8940 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 314.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8940 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000711.391.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8940 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (330604 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 2578.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (330604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 13918.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (330604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1322.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (330604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11637.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (330604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3471.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (330604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5554.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (330604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4198.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000061.392.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (330604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (691886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (691886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 24354.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (691886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2767.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (691886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 14564.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (691886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10793.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (691886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 11623.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (691886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3632.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000011.393.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (691886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8786.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (86794 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1353.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (86794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1458.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (86794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1102.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (86794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3654.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (86794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 347.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (86794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (86794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000421.394.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (86794 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (98044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (98044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1647.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (98044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1245.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (98044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (98044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 254.91 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (98044 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (98044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000371.395.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (98044 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 392.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (165048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 660.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (165048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2772.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (165048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 429.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (165048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2574.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (165048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5809.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (165048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (165048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6948.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000211.396.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (165048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-33 104.8 18.2 1.5e-33 104.8 18.2 4.1 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 104.8 18.2 2.5e-34 1.5e-33 2 155 .. 74648 74825 .. 74646 74826 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (511716 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.12u 0.00s 00:00:00.12 Elapsed: 00:00:00.13 # Mc/sec: 614.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (511716 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1330.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (511716 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2046.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-23 72.2 0.1 4.8e-22 67.5 0.1 2.2 1 frame_6 Domain annotation for each sequence: >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.5 0.1 8e-23 4.8e-22 1 168 [] 60157 60295 .. 60157 60295 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (511716 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.09u 0.01s 00:00:00.10 Elapsed: 00:00:00.09 # Mc/sec: 955.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (511716 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 6004.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (511716 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10771.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (511716 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6498.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (511716 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5373.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000031.397.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-24 73.9 0.0 7.2e-24 73.5 0.0 1.2 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.5 0.0 1.2e-24 7.2e-24 2 168 .] 869 1046 .. 868 1046 .. 0.86 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 228.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (6486 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 208.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (6486 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCR010000741.398.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (6486 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 278.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6622 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946021.3.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 184.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000631.39.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 461.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (215010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (215010 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 4525.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (215010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (215010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (215010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 559.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (215010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (215010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3354.16 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000201.399.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (215010 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7568.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 354.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 54.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000511.400.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (436826 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.06u 0.01s 00:00:00.06 Elapsed: 00:00:00.06 # Mc/sec: 3065.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (436826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7338.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (436826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4586.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (436826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1747.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (436826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 7688.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (436826 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5547.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.4e-34 105.5 15.8 9.4e-34 105.5 15.8 5.6 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 105.5 15.8 1.6e-34 9.4e-34 1 155 [. 2765 2943 .. 2765 2944 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (436826 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.08u 0.01s 00:00:00.09 Elapsed: 00:00:00.09 # Mc/sec: 757.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (436826 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1135.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000051.401.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (37650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 131.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (87866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (87866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (87866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 228.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (87866 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1370.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (87866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1115.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (87866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3092.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (87866 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000311.402.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (87866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (34852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 585.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (34852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (34852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (34852 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (34852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (34852 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (34852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000471.403.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (34852 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (256278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (256278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10789.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (256278 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9020.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (256278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (256278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (256278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-23 72.9 0.0 1.7e-23 72.3 0.0 1.3 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.3 0.0 2.8e-24 1.7e-23 2 167 .. 21715 21894 .. 21714 21895 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (256278 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.04 # Mc/sec: 1076.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (256278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1182.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000121.404.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1322.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (60836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (60836 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 949.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (60836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (60836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2141.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (60836 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (60836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (60836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000371.405.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (60836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (51306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (51306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (51306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (51306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (51306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (51306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (51306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 861.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000391.406.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (51306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1805.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (239554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (239554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10085.22 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.2e-19 57.0 0.0 1.3e-18 56.3 0.0 1.4 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.3 0.0 2.2e-19 1.3e-18 2 168 .] 4506 4668 .. 4505 4668 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (239554 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.06 # Mc/sec: 670.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (239554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3737.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (239554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (239554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3042.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (239554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (239554 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8432.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1319.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000151.407.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (32358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (32358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (32358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (32358 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (32358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 84.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (32358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 339.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (32358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000491.408.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (32358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 668.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000621.40.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (235788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3961.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (235788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (235788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (235788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (235788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2994.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (235788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3678.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (235788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9926.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000161.409.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (235788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8299.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (118648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (118648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (118648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (118648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4176.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (118648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (118648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1245.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (118648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000281.410.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (118648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 381.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 182.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000581.411.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (187332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (187332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (187332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 749.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (187332 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2922.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (187332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7886.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (187332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (187332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1966.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000221.412.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (187332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6594.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (37466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (37466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (37466 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (37466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (37466 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (37466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (37466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 149.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000421.413.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (37466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 228.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 280.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 46.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000551.414.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17978 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26596 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000501.415.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26596 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (45482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (45482 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1600.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (45482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (45482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (45482 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (45482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1914.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (45482 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000411.416.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (45482 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (55512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (55512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (55512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (55512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (55512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (55512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (55512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000381.417.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (55512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 865.99 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (244170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2563.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (244170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (244170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (244170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8594.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (244170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3809.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (244170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (244170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4102.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000141.418.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (244170 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 10279.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (51040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (51040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (51040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (51040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (51040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (51040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 796.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (51040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000491.41.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (51040 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1796.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (517646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (517646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6574.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (517646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4348.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (517646 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 1035.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (517646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8075.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (517646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 18221.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (517646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 21792.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000021.419.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (517646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5435.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (224502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3771.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (224502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7902.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (224502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (224502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (224502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3502.23 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (224502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 583.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (224502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000181.420.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (224502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2357.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (162416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (162416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6837.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (162416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 649.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (162416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (162416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2062.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (162416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (162416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5717.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000251.421.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (162416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (50544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (50544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2127.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (50544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (50544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 530.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (50544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (50544 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (50544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000401.422.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (50544 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 849.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19254 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19254 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19254 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 202.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19254 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19254 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19254 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19254 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000541.423.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19254 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (497508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6318.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (497508 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3880.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (497508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8358.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (497508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 17512.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (497508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1293.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (497508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10472.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (497508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000031.424.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (497508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5223.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 319.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 53.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 720.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000521.425.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (148212 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (148212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (148212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (148212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6239.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (148212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2489.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (148212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (148212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000271.426.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (148212 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2312.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (66188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 172.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (66188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (66188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (66188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2786.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (66188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (66188 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (66188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000341.427.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (66188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1111.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (218046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (218046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9179.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (218046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (218046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (218046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7675.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (218046 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3401.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (218046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2769.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000191.428.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (218046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (221168 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (221168 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (221168 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9311.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (221168 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (221168 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (221168 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (221168 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 884.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000161.42.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (221168 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3715.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36692 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 146.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1544.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000441.429.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (251330 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 1595.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (251330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4222.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (251330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8846.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (251330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 653.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (251330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10580.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (251330 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3920.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (251330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2638.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000131.430.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (251330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (150712 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6344.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (150712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (150712 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 391.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (150712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (150712 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2351.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (150712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (150712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5305.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000261.431.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (150712 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (108814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (108814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3830.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (108814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (108814 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4581.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (108814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 435.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (108814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (108814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000291.432.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (108814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1142.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (265028 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.04 # Mc/sec: 2789.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (265028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 689.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (265028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (265028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (265028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (265028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4134.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (265028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2782.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000101.433.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (265028 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9328.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (170866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (170866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (170866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2170.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (170866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (170866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7193.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (170866 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2665.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (170866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000241.434.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (170866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (175356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6172.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (175356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 455.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (175356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7382.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (175356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2735.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (175356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (175356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2945.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (175356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2227.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000231.435.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (175356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (62972 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 982.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (62972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (62972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (62972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (62972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (62972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2651.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (62972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000361.436.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (62972 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (546014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8517.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (546014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 9609.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (546014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9173.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (546014 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 11493.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (546014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2184.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (546014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6934.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (546014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5733.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000011.437.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (546014 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (89772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1400.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (89772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (89772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (89772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1140.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (89772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (89772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (89772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000301.438.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (89772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (184382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 737.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (184382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1936.01 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (184382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (184382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2341.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (184382 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2876.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (184382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7762.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (184382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000181.43.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (184382 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3097.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (258986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10903.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (258986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3289.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (258986 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4040.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (258986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9116.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (258986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (258986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (258986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000111.439.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (258986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (37448 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (37448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (37448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 629.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (37448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (37448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (37448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (37448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 584.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000431.440.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (37448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (353896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (353896 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5520.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (353896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 14899.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (353896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (353896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1415.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-13 37.6 0.0 1.2e-12 37.0 0.0 1.3 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.0 0.0 1.9e-13 1.2e-12 3 167 .. 13129 13317 .. 13128 13318 .. 0.82 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (353896 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.09 # Mc/sec: 660.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (353896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12457.14 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (353896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3715.91 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-50 159.9 0.0 4.8e-50 159.3 0.0 1.2 1 AOIprotein5 Domain annotation for each sequence: >> AOIprotein5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 159.3 0.0 8.1e-51 4.8e-50 6 321 .. 2625 2958 .. 2623 2959 .. 0.80 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41124 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 441.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-50 159.9 0.0 4.8e-50 159.3 0.0 1.2 1 AOIprotein5 Domain annotation for each sequence: >> AOIprotein5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 159.3 0.0 8.1e-51 4.8e-50 6 321 .. 2625 2958 .. 2623 2959 .. 0.80 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41124 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 662.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000071.441.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (477016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 8395.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (477016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6058.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (477016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7441.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (477016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1240.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (477016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8013.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (477016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5008.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (477016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1908.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000041.442.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (477016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10041.19 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (202846 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (202846 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3164.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (202846 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (202846 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7140.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (202846 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (202846 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8539.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (202846 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2576.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000211.443.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (202846 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 527.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (420830 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6564.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (420830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5344.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (420830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4418.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (420830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 8858.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (420830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 7406.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (420830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-25 78.4 0.0 1.6e-23 72.3 0.0 2.3 1 frame_2 3.5e-18 54.9 0.0 3.5e-18 54.9 0.0 1.6 1 frame_5 3.3e-11 32.2 0.0 2.1e-10 29.7 0.0 2.0 1 frame_3 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.3 0.0 7.9e-24 1.6e-23 1 168 [] 23991 24129 .. 23991 24129 .. 0.90 >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.9 0.0 1.7e-18 3.5e-18 2 167 .. 45701 45869 .. 45700 45870 .. 0.95 >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.7 0.0 1e-10 2.1e-10 5 168 .] 62635 62775 .. 62631 62775 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (420830 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 3 (0.5); expected 0.1 (0.02) Passed Vit filter: 3 (0.5); expected 0.0 (0.001) Passed Fwd filter: 3 (0.5); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.25u 0.01s 00:00:00.26 Elapsed: 00:00:00.25 # Mc/sec: 282.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (420830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1683.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000061.444.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (65548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (65548 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2307.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (65548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (65548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1101.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (65548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (65548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (65548 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000351.445.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (65548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 549.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000461.446.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35200 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 91.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7732 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 81.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000591.447.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 30.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 342.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20390 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 258.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20390 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000531.448.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (22566 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (22566 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (22566 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (22566 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (22566 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (22566 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (22566 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000571.44.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (22566 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (73504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3094.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (73504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (73504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 933.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (73504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (73504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 771.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (73504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (73504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000331.449.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (73504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (230822 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2931.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (230822 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 923.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (230822 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8124.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (230822 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9717.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (230822 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2423.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (230822 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3877.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (230822 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000171.450.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (230822 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3600.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (33152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (33152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (33152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1166.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (33152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (33152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (33152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (33152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000481.451.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (33152 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 222.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000571.452.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (83626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (83626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (83626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (83626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (83626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (83626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 334.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (83626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000321.453.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (83626 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1062.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (299260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4668.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (299260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12598.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (299260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (299260 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5266.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (299260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3800.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (299260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1197.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (299260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 778.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000091.454.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (299260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (309750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4832.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (309750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (309750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (309750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1239.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (309750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13040.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (309750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (309750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10903.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000081.455.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (309750 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 805.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1538.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000451.456.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13734 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 230.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13734 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 578.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSCO010000561.457.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 174.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (65078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (65078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (65078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (65078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2739.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (65078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (65078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (65078 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000591.458.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (65078 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (278532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (278532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4345.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (278532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 11726.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (278532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4679.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (278532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3537.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (278532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (278532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9804.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000121.45.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (278532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (95774 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (95774 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1005.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (95774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1216.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (95774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1609.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (95774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3371.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (95774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (95774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000401.459.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (95774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 249.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-12 36.4 0.0 4.4e-11 31.8 0.0 2.2 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.8 0.0 7.4e-12 4.4e-11 5 168 .] 8278 8418 .. 8274 8418 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (95528 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 401.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (95528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 248.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (95528 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (95528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3362.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (95528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (95528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (95528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (95528 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1490.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1176.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000421.460.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (54358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 217.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (54358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2288.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (54358 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (54358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (54358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (54358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (54358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000611.461.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (54358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (95766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3370.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (95766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (95766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1608.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (95766 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1493.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (95766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (95766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (95766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000411.462.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (95766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (231322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 601.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (231322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2428.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (231322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2937.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (231322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (231322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3886.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (231322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (231322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000101.463.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (231322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (159132 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 891.14 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (159132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1670.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (159132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (159132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2020.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (159132 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 413.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (159132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (159132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6699.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000221.464.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (159132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (81528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 211.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (81528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (81528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2869.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (81528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (81528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (81528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3432.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (81528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000501.465.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (81528 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (189370 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2954.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (189370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (189370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7972.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (189370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (189370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (189370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (189370 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1988.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.9e-24 73.3 0.0 1.2e-23 72.7 0.0 1.3 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.7 0.0 2e-24 1.2e-23 2 167 .. 6002 6181 .. 6001 6182 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (189370 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.05 # Mc/sec: 636.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1182.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000161.466.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (92514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (92514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3256.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (92514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (92514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (92514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (92514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (92514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1554.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000461.467.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (92514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (137148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1741.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (137148 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2139.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (137148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4827.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (137148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2304.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (137148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 356.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (137148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (137148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5773.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000281.468.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (137148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (234932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8269.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (234932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2983.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (234932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 939.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (234932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3664.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (234932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 610.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (234932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3946.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (234932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000151.46.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (234932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9890.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000741.469.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (130140 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 338.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (130140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (130140 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (130140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 520.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (130140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2186.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (130140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5478.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (130140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000301.470.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (130140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4580.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (70132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (70132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 182.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (70132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 280.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (70132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (70132 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2952.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (70132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2468.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (70132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000561.471.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (70132 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 547.03 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16414 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 172.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16414 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 208.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000771.472.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16414 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (91144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (91144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (91144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1531.22 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (91144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1157.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (91144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (91144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (91144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 236.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000481.473.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (91144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (54072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1903.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (54072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (54072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (54072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (54072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (54072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (54072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000621.474.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (54072 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (80006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (80006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (80006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (80006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (80006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (80006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (80006 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1016.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000521.475.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (80006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (34104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (34104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (34104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (34104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (34104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (34104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (34104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000691.476.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (34104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 31.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 433.03 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 191.91 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 129.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 156.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12302 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000811.477.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12302 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (105740 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4451.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (105740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1776.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (105740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1110.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (105740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (105740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3722.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (105740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (105740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000371.478.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (105740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1649.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (54462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (54462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (54462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 571.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (54462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1917.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (54462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2292.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (54462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (54462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000481.47.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (54462 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8024 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 282.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8024 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8024 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 125.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000861.479.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (94120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (94120 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (94120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (94120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 988.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (94120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (94120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3962.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (94120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3313.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-18 56.2 0.0 2e-18 55.8 0.0 1.2 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.8 0.0 3.3e-19 2e-18 2 168 .] 10348 10510 .. 10347 10510 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (94120 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 790.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1319.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1319.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000441.480.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (174810 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6153.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (174810 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (174810 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (174810 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 454.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (174810 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (174810 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2727.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (174810 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000211.481.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (174810 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (97126 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (97126 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1019.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (97126 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4089.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (97126 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (97126 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (97126 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (97126 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000391.482.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (97126 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (76140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (76140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (76140 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (76140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 304.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (76140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1279.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (76140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2680.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (76140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000531.483.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (76140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 71.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 350.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000721.484.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 452.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000791.485.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 67.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 331.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1100.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 919.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 274.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000731.486.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (179832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2283.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (179832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (179832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (179832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 719.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (179832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1888.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (179832 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2805.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (179832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000201.487.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (179832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (144868 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (144868 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (144868 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2259.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (144868 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (144868 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (144868 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1521.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (144868 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000261.488.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (144868 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5099.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 292.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000561.48.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 242.03 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (72476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3051.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (72476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (72476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (72476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (72476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (72476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (72476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000551.489.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (72476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (238260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3025.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (238260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2501.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (238260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (238260 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3716.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (238260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (238260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (238260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4002.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000091.490.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (238260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 953.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (227144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 590.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (227144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7995.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (227144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3543.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (227144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 908.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (227144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2385.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (227144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9562.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (227144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2884.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000111.491.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (227144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11196 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11196 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11196 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 394.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11196 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11196 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11196 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 44.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11196 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 471.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000821.492.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11196 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 328.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 393.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 98.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000851.493.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 156.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (80508 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3389.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (80508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2833.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (80508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (80508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (80508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1352.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (80508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (80508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000511.494.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (80508 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4153.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1238.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1840.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 471.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1498.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000331.495.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (117986 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 306.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (143932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2245.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (143932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5066.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (143932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (143932 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 575.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (143932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1511.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (143932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2418.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (143932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6059.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000271.496.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (143932 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 374.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 108.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000881.497.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 74.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 28.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 90.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 18.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000871.498.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7104 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 119.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-21 64.4 0.0 6e-21 63.9 0.0 1.2 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.9 0.0 1e-21 6e-21 2 168 .] 50390 50567 .. 50389 50567 .. 0.91 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (571752 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.13 # Mc/sec: 738.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (571752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6003.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (571752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7261.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (571752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2287.01 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (571752 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 4459.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (571752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1486.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (571752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10062.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (571752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 8023.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945981.4.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 213.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 176.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000611.49.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 262.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 59.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 38.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000781.499.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (65630 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1023.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (65630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (65630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 689.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (65630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 833.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (65630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2763.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (65630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (65630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000581.500.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (65630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2310.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (182378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7678.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (182378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6419.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (182378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2316.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (182378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (182378 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2845.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (182378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (182378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1914.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000191.501.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (182378 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (122798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1289.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (122798 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (122798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5169.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (122798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1559.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (122798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 491.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (122798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 319.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (122798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000311.502.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (122798 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2063.01 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (41802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (41802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (41802 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1471.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (41802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1759.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (41802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (41802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (41802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000661.503.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (41802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (330530 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 2578.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (330530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 859.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (330530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5552.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (330530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1322.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (330530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 13915.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (330530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 11634.66 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (330530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4197.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000021.504.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (330530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3470.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (52954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (52954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1863.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (52954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 889.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (52954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 137.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (52954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (52954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (52954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000641.505.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (52954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (153202 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2573.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (153202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (153202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (153202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (153202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 612.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (153202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-13 38.9 2.8 2.4e-13 38.2 2.8 1.2 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.2 2.8 4e-14 2.4e-13 56 142 .. 15142 15225 .. 15126 15238 .. 0.87 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (153202 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.09u 0.01s 00:00:00.10 Elapsed: 00:00:00.09 # Mc/sec: 716.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000251.506.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (153202 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 398.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (73638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (73638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (73638 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (73638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2592.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (73638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (73638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (73638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000541.507.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (73638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (241574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (241574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8503.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (241574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10170.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (241574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4058.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (241574 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 966.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (241574 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.02 # Mc/sec: 1884.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (241574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000081.508.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (241574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (90332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (90332 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (90332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (90332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (90332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (90332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3802.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (90332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3179.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000391.50.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (90332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1147.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (157242 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.05 # Mc/sec: 1323.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (157242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (157242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1651.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (157242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (157242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (157242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (157242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000231.509.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (157242 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5534.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (211274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7436.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (211274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3549.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (211274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (211274 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3295.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (211274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 549.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (211274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 845.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (211274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8894.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000121.510.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (211274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2683.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (67912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 713.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (67912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1059.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (67912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (67912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (67912 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2390.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (67912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (67912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2859.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000571.511.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (67912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (93662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (93662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1189.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (93662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1573.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (93662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (93662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3296.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (93662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3943.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (93662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000451.512.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (93662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 983.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-34 106.3 15.8 5.2e-34 106.3 15.8 4.0 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 106.3 15.8 8.6e-35 5.2e-34 1 155 [. 37032 37210 .. 37032 37211 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (242584 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.06u 0.01s 00:00:00.06 Elapsed: 00:00:00.07 # Mc/sec: 540.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (242584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8538.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (242584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (242584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (242584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (242584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3080.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (242584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10212.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (242584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4075.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000071.513.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (40390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 141.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (513006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2052.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (513006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 10798.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-25 77.7 0.0 2.4e-23 71.8 0.0 2.4 1 frame_4 5.4e-18 54.3 0.1 7.3e-18 53.9 0.1 1.2 1 frame_2 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.8 0.0 7.9e-24 2.4e-23 1 168 [] 65926 66064 .. 65926 66064 .. 0.90 >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.9 0.1 2.4e-18 7.3e-18 2 167 .. 19129 19297 .. 19128 19298 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (513006 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 2 (0.333333); expected 0.0 (0.001) Passed Fwd filter: 2 (0.333333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.20 # Mc/sec: 430.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (513006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (513006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6515.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (513006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 18057.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (513006 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 2667.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (513006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5386.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000011.514.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1320.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 45.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17602 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 274.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000761.515.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 573.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000671.516.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36736 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (195064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6866.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (195064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3277.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (195064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (195064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8212.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (195064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (195064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2477.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (195064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000131.517.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (195064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2048.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (91700 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (91700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (91700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 962.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (91700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (91700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (91700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (91700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000471.518.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (91700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (131772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4638.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (131772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5547.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (131772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (131772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (131772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (131772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (131772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 527.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000301.51.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (131772 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1673.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12342 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 434.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12342 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 519.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12342 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000801.519.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12342 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (102690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1304.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (102690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 266.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (102690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1601.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (102690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1078.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (102690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (102690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (102690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000381.520.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (102690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4323.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (250834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (250834 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10560.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (250834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (250834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (250834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 8829.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (250834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (250834 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2633.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000061.521.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (250834 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 652.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (33204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1397.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (33204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (33204 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 517.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (33204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 421.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (33204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (33204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 348.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (33204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000701.522.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (33204 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1168.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (94538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1200.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (94538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3980.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (94538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (94538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3327.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (94538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (94538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 992.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (94538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 245.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000431.523.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (94538 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 378.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (135636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4774.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (135636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (135636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (135636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 352.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (135636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5710.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (135636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (135636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2115.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000291.524.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (135636 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1722.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 216.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 95.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000891.525.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (182778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1919.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (182778 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (182778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3070.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (182778 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2851.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (182778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7694.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (182778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (182778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000181.526.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (182778 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6433.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (111934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (111934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (111934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1421.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (111934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (111934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1746.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (111934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (111934 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4712.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000351.527.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (111934 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 1970.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (87916 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (87916 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3701.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (87916 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3094.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (87916 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1476.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (87916 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (87916 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (87916 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000491.528.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (87916 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (68002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (68002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (68002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (68002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (68002 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1060.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (68002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (68002 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2393.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000451.52.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (68002 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (34918 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (34918 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (34918 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1229.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (34918 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 90.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (34918 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (34918 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (34918 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 586.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000681.529.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (34918 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 443.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (193592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 774.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (193592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2032.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (193592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 8150.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (193592 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3020.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (193592 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2458.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (193592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 503.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (193592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000141.530.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (193592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3252.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (155176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (155176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2606.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (155176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 620.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (155176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (155176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (155176 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (155176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 403.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000241.531.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (155176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (119184 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1513.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (119184 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (119184 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5017.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (119184 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 476.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (119184 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 309.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (119184 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (119184 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000321.532.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (119184 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (325696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6855.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (325696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4136.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (325696 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5080.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (325696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (325696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5471.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (325696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11464.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (325696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3419.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000031.533.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (325696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (190502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2000.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (190502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2419.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (190502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3200.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (190502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 495.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (190502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 762.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (190502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2971.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (190502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6705.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000151.534.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (190502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8020.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31896 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1342.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 497.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1122.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31896 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000711.535.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31896 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (254632 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8963.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (254632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (254632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4277.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (254632 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5360.00 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (254632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3233.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (254632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (254632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000051.536.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (254632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3972.26 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (301188 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 3533.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (301188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (301188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3825.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (301188 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (301188 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 6340.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (301188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (301188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3162.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000041.537.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (301188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5059.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (53720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1890.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (53720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (53720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2261.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (53720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 838.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (53720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (53720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (53720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 564.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000631.538.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (53720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (279620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 11772.00 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (279620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1118.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (279620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (279620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2936.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (279620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3551.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (279620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9842.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (279620 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4362.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000111.53.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (279620 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 28.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 392.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000831.539.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (187312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (187312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (187312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 487.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (187312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7885.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (187312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (187312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3146.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (187312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6593.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000171.540.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (187312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 749.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (117062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (117062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (117062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1486.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (117062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (117062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4120.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (117062 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1826.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (117062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000341.541.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (117062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4928.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10552 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 371.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10552 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 27.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 164.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000841.542.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (105800 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3724.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (105800 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4454.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (105800 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 275.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (105800 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (105800 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 423.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (105800 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (105800 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000361.543.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (105800 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18312 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 770.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 73.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000751.544.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1501.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 110.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 716.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000651.545.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42656 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (62188 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (62188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2189.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (62188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (62188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1044.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (62188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (62188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2618.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (62188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYW010000601.546.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (62188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1296.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 95.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1550.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000521.547.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 242.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 388.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 972.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23100 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 813.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000601.548.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 60.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (118240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4162.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (118240 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1844.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (118240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (118240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1241.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (118240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (118240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (118240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1986.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000331.54.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (118240 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 472.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (257578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 669.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (257578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (257578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10844.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (257578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9066.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (257578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2704.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (257578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (257578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000121.549.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (257578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4018.22 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (77952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (77952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (77952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (77952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 989.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (77952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (77952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 818.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (77952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000401.550.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (77952 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (127748 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1622.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (127748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (127748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5378.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (127748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (127748 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4496.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (127748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (127748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000271.551.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (127748 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (54532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (54532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (54532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (54532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1919.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (54532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (54532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 692.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (54532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000451.552.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (54532 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 572.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (138094 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 552.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (138094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2154.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-22 69.2 0.0 2.6e-22 68.4 0.0 1.4 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.4 0.0 4.4e-23 2.6e-22 2 168 .] 22803 22980 .. 22802 22980 .. 0.86 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (138094 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 773.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (138094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4860.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (138094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5813.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (138094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (138094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (138094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (21274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000251.553.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29562 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29562 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29562 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29562 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29562 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29562 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29562 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000541.554.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29562 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (88652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1489.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (88652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (88652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (88652 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (88652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (88652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (88652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000381.555.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (88652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 930.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (226768 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 4773.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (226768 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7982.23 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (226768 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3809.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (226768 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 907.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (226768 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (226768 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (226768 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000151.556.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (226768 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 1768.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25470 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1072.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 427.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 66.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 323.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000581.557.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (285548 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 2227.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (285548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (285548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 742.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (285548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2998.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (285548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3626.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (285548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5025.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (285548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12021.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000091.558.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (285548 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 571.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (165692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 430.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (165692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (165692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (165692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (165692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2783.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (165692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (165692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125811.55.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (165692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5832.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (75924 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (75924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (75924 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2672.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (75924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 197.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (75924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 964.23 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (75924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (75924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 303.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000421.559.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (75924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (110776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (110776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (110776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1163.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (110776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (110776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (110776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (110776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3899.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000301.560.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (110776 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (41880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (41880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 703.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (41880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (41880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (41880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (41880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (41880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 108.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000501.561.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (41880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1474.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (227546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (227546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-18 55.5 0.0 3.3e-18 55.0 0.0 1.2 1 frame_6 Domain annotation for each sequence: >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.0 0.0 5.5e-19 3.3e-18 2 167 .. 10124 10292 .. 10123 10293 .. 0.95 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (227546 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00.07 # Mc/sec: 546.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (227546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (227546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3549.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (227546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8009.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (227546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2889.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (227546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9579.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1320.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000141.562.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (119692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 311.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (119692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1256.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (119692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5039.03 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (119692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (119692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1520.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (119692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4213.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (119692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2010.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000281.563.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (119692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (376698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 6629.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (376698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 15858.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (376698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3955.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (376698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (376698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4784.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (376698 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 2938.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (376698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 979.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000071.564.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (376698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6328.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 180.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 603.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 288.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000621.565.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17148 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 721.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (105392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1644.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (105392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3709.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (105392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (105392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (105392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4437.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (105392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 274.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (105392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1338.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000321.566.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (105392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 421.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6032 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 94.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 63.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6032 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 253.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000721.567.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6032 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (103666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (103666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (103666 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1617.19 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (103666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4364.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (103666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (103666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 269.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (103666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3649.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000331.568.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (103666 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1741.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (159558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (159558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2680.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (159558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6717.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (159558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 638.23 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (159558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1675.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (159558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 414.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (159558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5616.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000241.56.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (159558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2489.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (48818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (48818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2055.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (48818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 820.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (48818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (48818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (48818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (48818 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 761.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000481.569.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (48818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 195.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 686.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19514 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000611.570.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (99614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (99614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 398.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (99614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (99614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1045.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (99614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (99614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1673.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (99614 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000341.571.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (99614 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3506.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 41.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000631.572.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 269.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (88676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 931.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (88676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (88676 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3121.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (88676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (88676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1126.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (88676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1489.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-06 16.2 0.0 1.7e-06 15.6 0.0 1.1 0 frame_2 Domain annotation for each sequence: >> frame_2 [No individual domains that satisfy reporting thresholds (although complete target did)] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (88676 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.03 # Mc/sec: 1244.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000371.573.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (88676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (90434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 949.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (90434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3807.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (90434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1410.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (90434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1519.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (90434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (90434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (90434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000361.574.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (90434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 39.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 254.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000651.575.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15140 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (132046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4648.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (132046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (132046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (132046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 343.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (132046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (132046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (132046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2059.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000261.576.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (132046 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5559.14 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 23.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000681.577.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8900 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 167.00 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 220.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 462.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 138.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000661.578.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 52.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (459866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9680.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (459866 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3586.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (459866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1839.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (459866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1195.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (459866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5840.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (459866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4828.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (459866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7725.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000071.57.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (459866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 16187.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (238082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (238082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 619.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (238082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (238082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10023.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (238082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3999.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (238082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3714.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (238082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000131.579.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (238082 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8380.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (52088 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1833.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (52088 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.1e-35 108.9 17.5 1.8e-34 107.8 17.5 1.5 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 107.8 17.5 3e-35 1.8e-34 2 155 .. 4892 5069 .. 4890 5070 .. 0.90 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (52088 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 812.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (52088 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (52088 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (52088 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (52088 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (52088 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 546.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000471.580.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (434224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4559.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (434224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7294.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (434224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 7642.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (434224 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9140.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (434224 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6773.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (434224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1128.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (434224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000051.581.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (434224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (166100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (166100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6992.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (166100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (166100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (166100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2591.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (166100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 664.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (166100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000201.582.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (166100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (177610 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7477.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (177610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (177610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2770.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (177610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1864.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (177610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6251.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (177610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (177610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 461.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000191.583.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (177610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 710.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (38446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (38446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 645.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (38446 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (38446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (38446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1353.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (38446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (38446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000511.584.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (38446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1618.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (43390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (43390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 676.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (43390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1527.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (43390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (43390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (43390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (43390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000491.585.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (43390 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 258.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 40.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000641.586.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (186864 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3933.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (186864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (186864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6577.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (186864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (186864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1962.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (186864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 485.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (186864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000171.587.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (186864 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2915.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 123.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 93.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 19.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000701.588.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7380 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (163612 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6888.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (163612 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (163612 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1717.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (163612 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2748.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (163612 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (163612 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (163612 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000231.58.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (163612 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24662 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 98.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1038.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 258.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000591.589.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24662 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 384.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (57850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (57850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 734.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (57850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (57850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2435.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (57850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (57850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (57850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 971.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000441.590.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (57850 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (872384 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00.05 # Mc/sec: 7345.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (872384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3489.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (872384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 5539.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (872384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 10235.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (872384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4580.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (872384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2268.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (872384 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.06 # Mc/sec: 2442.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000011.591.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (872384 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.04 # Mc/sec: 3402.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (108642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (108642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1694.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (108642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1379.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (108642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (108642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4573.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (108642 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 282.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (108642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000311.592.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (108642 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (63126 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 662.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (63126 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (63126 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (63126 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (63126 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (63126 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (63126 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 252.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000431.593.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (63126 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (98142 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (98142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (98142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4131.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (98142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (98142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1246.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (98142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1531.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (98142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 255.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000351.594.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (98142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (285468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (285468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2997.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (285468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4795.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (285468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10048.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (285468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (285468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3625.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (285468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 12018.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000101.595.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (285468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1141.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (532548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8946.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (532548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5591.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (532548 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 7473.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (532548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2130.19 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (532548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6763.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (532548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1384.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (532548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8307.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000041.596.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (532548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 9372.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (188740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (188740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7945.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (188740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6643.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (188740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (188740 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2944.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (188740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (188740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000161.597.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (188740 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 754.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (581892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6109.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (581892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9077.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (581892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 10241.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-23 71.9 0.1 5.5e-22 67.3 0.1 2.2 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.3 0.1 9.1e-23 5.5e-22 1 168 [] 60324 60462 .. 60324 60462 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (581892 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.13u 0.00s 00:00:00.13 Elapsed: 00:00:00.14 # Mc/sec: 698.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (581892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 8165.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (581892 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 2463.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (581892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (581892 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1512.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000031.598.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (5915008 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.26u 0.04s 00:00:00.30 Elapsed: 00:00:00.16 # Mc/sec: 5767.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-41 131.2 4.8 1.6e-41 130.7 4.8 1.2 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 130.7 4.8 2.6e-42 1.6e-41 4 351 .. 401504 401873 .. 401501 401874 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (5915008 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 1.86u 0.06s 00:00:01.92 Elapsed: 00:00:01.81 # Mc/sec: 1150.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-38 121.2 0.0 9.3e-29 89.4 0.0 2.5 2 frame_3 2.4e-21 65.3 0.0 3.4e-21 64.7 0.0 1.2 1 frame_2 1.7e-20 62.5 0.1 3.4e-20 61.5 0.1 1.5 1 frame_6 1.9e-19 59.1 0.0 2.8e-19 58.5 0.0 1.3 1 frame_5 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.3 0.0 1.7e-10 2.6e-10 3 168 .] 133931 134073 .. 133929 134073 .. 0.84 2 ! 89.4 0.0 6.2e-29 9.3e-29 3 167 .. 270765 270974 .. 270763 270975 .. 0.89 >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.7 0.0 2.3e-21 3.4e-21 2 167 .. 142567 142746 .. 142566 142747 .. 0.90 >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.5 0.1 2.3e-20 3.4e-20 2 168 .] 382312 382449 .. 382311 382449 .. 0.92 >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.5 0.0 1.9e-19 2.8e-19 2 168 .] 92698 92864 .. 92697 92864 .. 0.88 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (5915008 residues searched) Passed MSV filter: 5 (0.833333); expected 0.1 (0.02) Passed bias filter: 5 (0.833333); expected 0.1 (0.02) Passed Vit filter: 5 (0.833333); expected 0.0 (0.001) Passed Fwd filter: 4 (0.666667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 4.09u 0.12s 00:00:04.21 Elapsed: 00:00:01.88 # Mc/sec: 528.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (5915008 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.09u 0.01s 00:00:00.10 Elapsed: 00:00:00.07 # Mc/sec: 10731.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (5915008 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.12u 0.02s 00:00:00.13 Elapsed: 00:00:00.14 # Mc/sec: 1098.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (5915008 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.08u 0.01s 00:00:00.09 Elapsed: 00:00:00.07 # Mc/sec: 3380.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (5915008 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.40u 0.02s 00:00:00.42 Elapsed: 00:00:00.21 # Mc/sec: 11858.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (5915008 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.09u 0.01s 00:00:00.10 Elapsed: 00:00:00.06 # Mc/sec: 10351.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1314.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1315.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF13575.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF13575.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: DUF4135 [M=377] Accession: PF13575.8 Description: Domain of unknown function (DUF4135) Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (377 nodes) Target sequences: 6 (42210 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF04738.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF04738.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_N [M=650] Accession: PF04738.15 Description: Lantibiotic dehydratase, N terminus Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-183 598.3 0.0 5.2e-183 598.1 0.0 1.0 1 AOIprotein2 Domain annotation for each sequence: >> AOIprotein2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 598.1 0.0 8.6e-184 5.2e-183 3 648 .. 3760 4410 .. 3758 4412 .. 0.96 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (650 nodes) Target sequences: 6 (42210 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.06 # Mc/sec: 457.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-54 173.1 0.0 4.4e-54 172.8 0.0 1.1 1 AOIprotein1 Domain annotation for each sequence: >> AOIprotein1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 172.8 0.0 7.3e-55 4.4e-54 1 288 [] 4474 4736 .. 4474 4736 .. 0.95 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (42210 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 405.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/lanl.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.lanl.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: lanl [M=55] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (55 nodes) Target sequences: 6 (42210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1180.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41250 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41250 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1188.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5945961.5.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41250 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (109432 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (109432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1838.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (109432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3852.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (109432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (109432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1707.14 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (109432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (109432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000351.59.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (109432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29560 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 310.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29560 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000551.599.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29560 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 496.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (52618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2215.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (52618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 883.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (52618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 552.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (52618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (52618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (52618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 668.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (52618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000461.600.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (52618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 820.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (156442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (156442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6586.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (156442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1642.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (156442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (156442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5506.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (156442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (156442 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2440.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000221.601.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (156442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1986.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-24 75.0 0.0 3.8e-24 74.4 0.0 1.3 1 frame_2 1e-23 72.9 0.0 1.5e-23 72.4 0.0 1.2 1 frame_3 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.4 0.0 1.3e-24 3.8e-24 2 168 .] 22949 23116 .. 22948 23116 .. 0.90 >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.4 0.0 5e-24 1.5e-23 2 167 .. 4554 4733 .. 4553 4734 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (141226 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 2 (0.333333); expected 0.0 (0.001) Passed Fwd filter: 2 (0.333333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.09 # Mc/sec: 263.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (141226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5945.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (141226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4971.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (141226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 564.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (141226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (141226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1793.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (141226 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (141226 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (23530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 757.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (23530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (23530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 757.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1322.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1182.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000241.602.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (149992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (149992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5279.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (149992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6314.66 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (149992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 599.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (149992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (149992 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (149992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2519.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000231.603.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (149992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (393602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 8285.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (393602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1574.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-22 67.8 0.2 2.7e-20 61.8 0.2 2.2 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.8 0.2 4.5e-21 2.7e-20 1 168 [] 7749 7891 .. 7749 7891 .. 0.87 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (393602 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.09u 0.01s 00:00:00.10 Elapsed: 00:00:00.10 # Mc/sec: 661.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (393602 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 2046.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (393602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1023.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (393602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4132.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (393602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13854.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (393602 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4998.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000061.604.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (263872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4116.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (263872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 11109.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (263872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (263872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 4644.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (263872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (263872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2770.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (263872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3351.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000111.605.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (263872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (184698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6501.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (184698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (184698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 738.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (184698 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2881.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (184698 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3102.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (184698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7775.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (184698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000181.606.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (184698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 480.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (117578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 470.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (117578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1493.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (117578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1975.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (117578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 305.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (117578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (117578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (117578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1834.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000291.607.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (117578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4950.03 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (28792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 365.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (28792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 449.16 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (28792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 74.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (28792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 302.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (28792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (28792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (28792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1013.48 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000561.608.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (28792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1212.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (89534 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3769.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (89534 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1137.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (89534 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (89534 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (89534 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (89534 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (89534 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1504.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000401.60.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (89534 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 42.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 135.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 27.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000671.609.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10696 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (294840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (294840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 766.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (294840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4599.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (294840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1179.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (294840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-12 37.0 0.0 2.7e-09 26.0 0.0 2.2 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.0 0.0 4.5e-10 2.7e-09 120 168 .] 43732 43780 .. 43725 43780 .. 0.96 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (294840 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.06 # Mc/sec: 825.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (294840 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3744.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (294840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12412.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000081.610.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 287.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8160 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 85.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000691.611.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (77924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (77924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (77924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (77924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3280.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (77924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 311.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (77924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2742.92 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (77924 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1215.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000411.612.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (77924 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 989.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 448.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000531.613.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35308 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (161942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5700.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (161942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (161942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (161942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6817.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (161942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (161942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (161942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2056.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000211.614.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (161942 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 237.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 70.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6758 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 113.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000711.615.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6758 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (82446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (82446 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2902.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (82446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (82446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (82446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (82446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (82446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000391.616.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (82446 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 341.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000571.617.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26878 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (589292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 12404.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (589292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1532.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (589292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2357.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (589292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7484.01 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (589292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 20743.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (589292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6187.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (589292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9900.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRZA010000021.618.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (589292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9192.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (168152 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2623.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (168152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (168152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 437.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (168152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1765.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (168152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7079.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (168152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2135.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (168152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2824.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000201.61.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (168152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (156690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (156690 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2444.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (156690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (156690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (156690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5515.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (156690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6596.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (156690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000221.619.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (156690 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (74468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3135.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (74468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (74468 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (74468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2621.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (74468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (74468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (74468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1251.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000391.620.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (74468 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 961.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27306 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000551.621.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 109.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 252.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 310.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 208.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000611.622.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 836.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (32020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (32020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 406.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (32020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (32020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 537.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (32020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 128.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (32020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 83.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (32020 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000541.623.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (32020 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (578142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7342.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (578142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9712.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (578142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 24339.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (578142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6070.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (578142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1503.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (578142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2312.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (578142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9019.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000011.624.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (578142 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 20350.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 64.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 872.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24784 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000591.625.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24784 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (66356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (66356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (66356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (66356 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (66356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (66356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (66356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000411.626.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (66356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (58968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (58968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (58968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (58968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 748.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (58968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 235.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (58968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (58968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000441.627.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (58968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2482.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 42.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 372.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000711.628.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 164.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (101114 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1577.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (101114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (101114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1284.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (101114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1061.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (101114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (101114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4256.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (101114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000381.62.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (101114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (141268 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (141268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5947.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (141268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1794.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (141268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (141268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1483.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (141268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2373.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (141268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4972.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000271.629.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (141268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (62494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (62494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (62494 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (62494 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (62494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (62494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (62494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000421.630.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (62494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (149260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (149260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (149260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5253.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (149260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (149260 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1895.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (149260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (149260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6283.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000241.631.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (149260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 597.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 71.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 114.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 27.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 86.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 17.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6832 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000731.632.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (240188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5055.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (240188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (240188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 624.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (240188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 960.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (240188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3050.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (240188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (240188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3746.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000121.633.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (240188 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 8454.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (258028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9082.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (258028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (258028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 670.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (258028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10862.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (258028 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3276.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (258028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2709.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (258028 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4025.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000111.634.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (258028 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (144352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (144352 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 375.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (144352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (144352 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (144352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (144352 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (144352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000261.635.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (144352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (289844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12202.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (289844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (289844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10202.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (289844 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4521.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (289844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 753.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (289844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (289844 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3043.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-13 37.9 0.0 9.4e-13 37.3 0.0 1.2 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.3 0.0 1.6e-13 9.4e-13 3 167 .. 1830 2018 .. 1829 2019 .. 0.82 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (289844 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.08u 0.00s 00:00:00.08 Elapsed: 00:00:00.08 # Mc/sec: 608.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-30 93.4 0.0 8.5e-30 92.8 0.0 1.2 1 AOIprotein3 Domain annotation for each sequence: >> AOIprotein3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 92.8 0.0 1.4e-30 8.5e-30 105 321 .. 1217 1454 .. 1204 1455 .. 0.76 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (32100 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 516.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-30 93.4 0.0 8.5e-30 92.8 0.0 1.2 1 AOIprotein3 Domain annotation for each sequence: >> AOIprotein3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 92.8 0.0 1.4e-30 8.5e-30 105 321 .. 1217 1454 .. 1204 1455 .. 0.76 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (32100 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 516.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000071.636.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (32100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 924.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (192974 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3010.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (192974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (192974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (192974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (192974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2450.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (192974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8124.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (192974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000171.637.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (192974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 630.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 527.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14976 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000651.638.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (911496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2369.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (911496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 7109.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (911496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 1822.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (911496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 11576.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (911496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 # Mc/sec: 9593.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (911496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 16042.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (911496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9570.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KI9125781.63.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (911496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 7656.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23172 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23172 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23172 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23172 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23172 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23172 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23172 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000601.639.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23172 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 975.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (151502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1590.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (151502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5332.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (151502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2545.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (151502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (151502 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2363.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (151502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1924.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (151502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000231.640.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (151502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6378.23 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (301898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4709.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (301898 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.04 # Mc/sec: 3177.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (301898 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5313.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (301898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3834.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (301898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (301898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 784.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (301898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5071.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000051.641.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (301898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (52440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 550.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (52440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (52440 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 818.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (52440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (52440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (52440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (52440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1845.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000461.642.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (52440 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (34224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (34224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (34224 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (34224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (34224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (34224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (34224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1204.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000521.643.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (34224 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (175944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (175944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (175944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6193.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (175944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (175944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (175944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (175944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000201.644.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (175944 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2234.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (99444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (99444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 397.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (99444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3500.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (99444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1551.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (99444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (99444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (99444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000331.645.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (99444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (86964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1356.64 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (86964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1461.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (86964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 226.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (86964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3661.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (86964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (86964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (86964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000361.646.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (86964 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1104.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 459.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 138.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10912 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 384.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000701.647.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10912 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (48524 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 756.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (48524 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 815.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (48524 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (48524 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (48524 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (48524 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 509.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (48524 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000471.648.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (48524 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2042.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (86332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (86332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3038.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (86332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 906.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (86332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (86332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (86332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (86332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 224.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000411.64.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (86332 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3634.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (218386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (218386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3668.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (218386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2293.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (218386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2773.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-34 106.5 15.8 4.6e-34 106.5 15.8 4.9 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 106.5 15.8 7.7e-35 4.6e-34 1 155 [. 8373 8551 .. 8373 8552 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (218386 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.04 # Mc/sec: 851.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (218386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9194.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (218386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (218386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7687.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000151.649.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26652 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 447.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 69.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000561.650.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (106862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (106862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (106862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3761.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (106862 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1667.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (106862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1357.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (106862 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (106862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000321.651.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (106862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 427.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (114114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (114114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (114114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (114114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4016.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (114114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1917.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (114114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 456.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (114114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4804.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000311.652.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (114114 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1780.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (15300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (15300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (15300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 160.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (15300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (15300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (15300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 238.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (15300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000641.653.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (15300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 538.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 742.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6538.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2358.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2897.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7819.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000191.654.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (185742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3120.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (144630 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5090.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (144630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (144630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (144630 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (144630 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (144630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (144630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1836.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000251.655.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (144630 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (211144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8889.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (211144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2217.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (211144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (211144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (211144 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3293.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (211144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3547.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (211144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000161.656.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (211144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (259092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (259092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3290.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (259092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9120.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-19 56.7 0.0 1.5e-18 56.2 0.0 1.3 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.2 0.0 2.4e-19 1.5e-18 2 168 .] 2682 2844 .. 2681 2844 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (259092 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.07u 0.01s 00:00:00.08 Elapsed: 00:00:00.08 # Mc/sec: 544.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (259092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4041.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (259092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 673.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (259092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (259092 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 10907.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (37056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (37056 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1067.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000091.657.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (37056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (160362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6751.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (160362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (160362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (160362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 416.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (160362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (160362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2501.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (160362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000211.658.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (160362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (121050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (121050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (121050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1271.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (121050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (121050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (121050 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5096.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (121050 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000321.65.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (121050 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1888.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (33202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (33202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (33202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (33202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 557.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (33202 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (33202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 132.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (33202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 348.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000531.659.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (33202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 425.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12096 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 188.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000691.660.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12096 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 153.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (425858 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.03 # Mc/sec: 5976.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (425858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1703.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (425858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 14990.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (425858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4471.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (425858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5408.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (425858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6643.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (425858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7154.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000021.661.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (425858 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1107.23 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (120412 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4238.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (120412 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1878.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (120412 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (120412 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1529.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (120412 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 481.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (120412 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 313.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (120412 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000291.662.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (120412 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 452.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1501.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 92.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000511.663.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18480 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 310.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000631.664.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 778.01 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (61618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (61618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 246.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (61618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 646.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (61618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 160.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.2e-13 37.5 0.0 2.8e-11 32.5 0.0 2.1 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.5 0.0 4.6e-12 2.8e-11 5 168 .] 9083 9223 .. 9079 9223 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (61618 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 345.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (61618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (61618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2594.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (61618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 782.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (27118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (27118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000431.665.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (27118 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (84594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (84594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1319.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (84594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (84594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (84594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (84594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 888.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (84594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000381.666.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (84594 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (94648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (94648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1590.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (94648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (94648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 378.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (94648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 246.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (94648 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1476.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (94648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3984.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000351.667.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (94648 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 111.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000481.668.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (60886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2143.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (60886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (60886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 949.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (60886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (60886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (60886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 773.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (60886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000461.66.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (60886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25508 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 397.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 102.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 66.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25508 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000581.669.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25508 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 32.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 339.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000721.670.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8066 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 135.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 546.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12980 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 136.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 456.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000671.671.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12980 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 202.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (73628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1236.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (73628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (73628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3099.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (73628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (73628 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 294.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (73628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 191.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (73628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000401.672.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (73628 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 935.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (223382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (223382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 4702.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (223382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (223382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (223382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (223382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (223382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7863.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000131.673.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (223382 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3752.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (126938 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (126938 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 2234.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (126938 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (126938 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5344.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (126938 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (126938 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (126938 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-24 74.2 0.0 7.8e-24 73.3 0.0 1.5 1 frame_6 Domain annotation for each sequence: >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.3 0.0 1.3e-24 7.8e-24 2 167 .. 9071 9250 .. 9070 9251 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (126938 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 1066.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000281.674.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (99218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (99218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (99218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (99218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3492.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (99218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 396.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (99218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (99218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000341.675.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (99218 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 385.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36734 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1546.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000501.676.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (316790 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3326.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-25 79.1 0.0 1.2e-23 72.8 0.0 2.2 1 frame_6 1.9e-18 55.8 0.0 2.6e-18 55.4 0.0 1.2 1 frame_1 Domain annotation for each sequence: >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.8 0.0 3.9e-24 1.2e-23 1 168 [] 23155 23293 .. 23155 23293 .. 0.90 >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.4 0.0 8.7e-19 2.6e-18 2 167 .. 29197 29365 .. 29196 29366 .. 0.95 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (316790 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 2 (0.333333); expected 0.0 (0.001) Passed Fwd filter: 2 (0.333333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.12u 0.00s 00:00:00.12 Elapsed: 00:00:00.13 # Mc/sec: 409.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (316790 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11151.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (316790 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 2470.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (316790 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (316790 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13336.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (316790 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4023.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (316790 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1267.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1175.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1180.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000031.677.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1320.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (86376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 345.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (86376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (86376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3636.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (86376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (86376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (86376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (86376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000371.678.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (86376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (86162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1344.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (86162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (86162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3032.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (86162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 904.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (86162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (86162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (86162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3627.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000421.67.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (86162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1085.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000571.679.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (223284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (223284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (223284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3751.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (223284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (223284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7859.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (223284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (223284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2835.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000141.680.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (223284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2344.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (258034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9082.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (258034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4025.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (258034 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1032.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (258034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4334.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (258034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (258034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (258034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2709.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000101.681.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (258034 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 10863.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (298830 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00.05 # Mc/sec: 1004.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (298830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4661.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (298830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (298830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10518.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (298830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 776.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (298830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (298830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000061.682.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (298830 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12580.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13168 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13168 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13168 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 463.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13168 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13168 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13168 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 221.22 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13168 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000661.683.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13168 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 167.23 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (54512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (54512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 850.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (54512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (54512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 141.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (54512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (54512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (54512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000451.684.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (54512 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (289160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (289160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (289160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 12173.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (289160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (289160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 751.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (289160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10178.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (289160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4857.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000081.685.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (289160 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4510.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 198.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000621.686.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 240.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (187072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (187072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (187072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7875.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (187072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (187072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (187072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (187072 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000181.687.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (187072 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2918.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (114604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (114604 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4824.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (114604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1925.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (114604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (114604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 297.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (114604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1455.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (114604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000301.688.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (114604 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (144910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (144910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 579.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (144910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (144910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 376.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (144910 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6100.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (144910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (144910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2260.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000281.68.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (144910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12460 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 194.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 524.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000681.689.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (309840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3934.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (309840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3253.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (309840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4833.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (309840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1239.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (309840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5205.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (309840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (309840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000041.690.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (309840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1547.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRYI010000491.691.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1293.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (193880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (193880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (193880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (193880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (193880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (193880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2035.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (193880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6824.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000181.692.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (193880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 88.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-20 62.0 0.0 3.1e-20 61.6 0.0 1.2 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.6 0.0 5.2e-21 3.1e-20 2 168 .] 183 345 .. 182 345 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8408 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (8402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (8402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000471.693.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (8402 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (369062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1476.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.9e-34 105.7 15.8 7.9e-34 105.7 15.8 4.5 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 105.7 15.8 1.3e-34 7.9e-34 1 155 [. 11685 11863 .. 11685 11864 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (369062 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.06 # Mc/sec: 959.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (369062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (369062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 7768.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (369062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (369062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 6495.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (369062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4687.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (369062 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3875.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000101.694.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 143.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (117832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1838.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (117832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (117832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4960.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (117832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (117832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (117832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1979.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (117832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4147.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000231.695.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (117832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (208000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (208000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7321.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (208000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (208000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3244.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (208000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2641.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (208000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (208000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000151.696.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (208000 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8756.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 56.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21646 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000431.697.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 274.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (400788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1042.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (400788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 14107.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (400788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (400788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6733.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (400788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (400788 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6252.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (400788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 16873.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000081.698.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (400788 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1603.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (58086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (58086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (58086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 975.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (58086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (58086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (58086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (58086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946001.6.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (58086 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (105872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (105872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (105872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (105872 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 1863.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (105872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (105872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4457.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (105872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000371.69.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (105872 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 275.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21176 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000441.699.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21176 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 330.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (28996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (28996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (28996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (28996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (28996 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (28996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (28996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000391.700.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (28996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (389354 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13705.26 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (389354 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1012.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (389354 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1557.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (389354 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 16391.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (389354 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (389354 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6541.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (389354 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6073.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000091.701.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (389354 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4944.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (46610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1640.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (46610 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (46610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 591.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (46610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 783.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (46610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (46610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 186.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (46610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000351.702.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (46610 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1962.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (548496 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4278.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (548496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2193.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (548496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1426.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-25 77.6 0.0 2.1e-23 72.0 0.0 2.3 1 frame_3 3.3e-18 55.0 0.0 4.6e-18 54.6 0.0 1.2 1 frame_6 5.2e-11 31.6 0.0 2.7e-10 29.3 0.0 2.0 1 frame_2 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.0 0.0 1e-23 2.1e-23 1 168 [] 56942 57080 .. 56942 57080 .. 0.90 >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.6 0.0 2.3e-18 4.6e-18 2 167 .. 34027 34195 .. 34026 34196 .. 0.95 >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.3 0.0 1.3e-10 2.7e-10 5 168 .] 83787 83927 .. 83783 83927 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (548496 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 3 (0.5); expected 0.1 (0.02) Passed Vit filter: 3 (0.5); expected 0.0 (0.001) Passed Fwd filter: 3 (0.5); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.27u 0.00s 00:00:00.27 Elapsed: 00:00:00.28 # Mc/sec: 329.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (548496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9653.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (548496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 11545.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (548496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5759.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (548496 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6965.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1176.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1320.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1175.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000061.703.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (681268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11445.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (681268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7153.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (681268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8652.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (681268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2725.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (681268 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5313.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (681268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 11990.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (681268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1771.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000031.704.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (681268 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 9560.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (258288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 9091.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (258288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5436.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (258288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (258288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2712.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (258288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4029.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (258288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (258288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000121.705.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (258288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3280.26 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (90094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (90094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (90094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 360.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (90094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (90094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (90094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1144.19 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (90094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000291.706.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (90094 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (91530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (91530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 237.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (91530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1162.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (91530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (91530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3221.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (91530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (91530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000281.707.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (91530 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 16.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000511.708.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6258 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (57004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (57004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 148.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (57004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (57004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (57004 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2006.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (57004 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 1199.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (57004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 723.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000471.70.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (57004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (237252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9988.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (237252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (237252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2491.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (237252 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3701.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (237252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3013.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (237252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (237252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000141.709.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (237252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3985.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (45112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (45112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (45112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (45112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (45112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (45112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 117.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (45112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000361.710.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (45112 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 703.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (33552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (33552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (33552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (33552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (33552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (33552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (33552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000381.711.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (33552 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 523.41 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (752426 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.04 # Mc/sec: 2934.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (752426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1956.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (752426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3009.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (752426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9555.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (752426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12640.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (752426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7900.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (752426 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 15838.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000021.712.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (752426 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 8828.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (53714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (53714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 902.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (53714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 564.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (53714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (53714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (53714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (53714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 837.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000341.713.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (53714 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2261.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 768.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21840 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 229.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 919.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 340.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 56.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 277.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000421.714.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21840 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (57650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (57650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (57650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2427.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (57650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-24 75.1 0.0 3.5e-24 74.5 0.0 1.3 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 74.5 0.0 5.8e-25 3.5e-24 2 167 .. 8252 8431 .. 8251 8432 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (57650 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 968.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (57650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2029.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (57650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (57650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (28136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (28136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000331.715.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (28136 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (85606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (85606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (85606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3013.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (85606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1335.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (85606 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (85606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 898.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (85606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000301.716.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (85606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000491.717.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7722 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7022 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 18.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 89.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000501.718.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (30502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 320.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (30502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (30502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (30502 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (30502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (30502 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1073.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (30502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000531.71.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (30502 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (815854 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 3181.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (815854 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.05 # Mc/sec: 6869.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (815854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8566.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (815854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5180.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (815854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 28718.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (815854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2121.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (815854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3263.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000011.719.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (815854 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13706.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16058 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16058 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 676.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16058 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 64.23 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000451.720.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (512618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6510.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (512618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 9022.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (512618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1332.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (512618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7996.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (512618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (512618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (512618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5382.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000071.721.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (512618 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 5395.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (125974 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1965.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (125974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (125974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5303.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (125974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (125974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (125974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (125974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1322.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000201.722.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (125974 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 259.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 64.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 96.19 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6166 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 24.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000521.723.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 140.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000481.724.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8356 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (70166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2469.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (70166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1178.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (70166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (70166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (70166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (70166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (70166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000311.725.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (70166 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (255006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2677.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (255006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 663.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (255006 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1020.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (255006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3238.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (255006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 8976.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (255006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4284.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (255006 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000131.726.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (255006 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 457.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1268.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000371.727.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36036 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1517.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (124442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (124442 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1941.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (124442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (124442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1580.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (124442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (124442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5239.01 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (124442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4380.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000211.728.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (124442 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (169948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2158.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (169948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 679.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (169948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1784.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-21 65.1 0.2 1.7e-19 59.2 0.2 2.2 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.2 0.2 2.8e-20 1.7e-19 1 168 [] 21674 21816 .. 21674 21816 .. 0.86 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (169948 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.04 # Mc/sec: 713.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (169948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5982.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (169948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (169948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7154.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (169948 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2651.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1315.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000191.72.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (130888 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 523.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (130888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (130888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (130888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1662.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (130888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5510.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (130888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (130888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2041.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000191.729.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (130888 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (23584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (23584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (23584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (23584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 396.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (23584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 992.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (23584 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (23584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000411.730.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (23584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (99466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1551.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (99466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (99466 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (99466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3501.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (99466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (99466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 397.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-05 14.0 0.0 0.00085 8.1 0.0 2.6 0 frame_3 Domain annotation for each sequence: >> frame_3 [No individual domains that satisfy reporting thresholds (although complete target did)] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (99466 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 835.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000251.731.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (99466 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (194404 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6843.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (194404 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3032.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (194404 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2468.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (194404 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (194404 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (194404 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3265.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (194404 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 505.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000171.732.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (194404 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8184.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (570456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1483.19 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (570456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9583.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (570456 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.07u 0.00s 00:00:00.07 Elapsed: 00:00:00.08 # Mc/sec: 3002.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (570456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7244.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (570456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10040.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (570456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5989.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (570456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8899.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000051.733.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (570456 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2281.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (596574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10499.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (596574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1551.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (596574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7576.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (596574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2386.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (596574 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4653.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (596574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 25115.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (596574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6264.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000041.734.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (596574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5011.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11698 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 411.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000461.735.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 492.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (302634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (302634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (302634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6370.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (302634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10652.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (302634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (302634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (302634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3177.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000111.736.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (302634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (204022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (204022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3182.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (204022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7181.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (204022 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 816.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (204022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (204022 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8589.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (204022 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000161.737.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (204022 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 530.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (58164 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 907.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (58164 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (58164 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (58164 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (58164 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (58164 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (58164 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000321.738.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (58164 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 263.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 421.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 883.80 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 318.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000541.73.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25108 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 65.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (24760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (24760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 871.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (24760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (24760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 64.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (24760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 314.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (24760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1042.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (24760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000401.739.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (24760 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (95120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (95120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (95120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (95120 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (95120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (95120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (95120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000271.740.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (95120 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (101322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1702.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (101322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3566.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (101322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4265.66 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (101322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (101322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (101322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (101322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1580.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000241.741.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (101322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1063.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (120558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4243.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (120558 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 313.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (120558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1531.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (120558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 482.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (120558 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2025.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (120558 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1265.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (120558 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000221.742.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (120558 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5075.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (96988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (96988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (96988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (96988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 252.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (96988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3413.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (96988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (96988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1513.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFJ010000261.743.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (96988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (423876 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 17845.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (423876 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (423876 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 14920.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (423876 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4450.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (423876 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 2691.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (423876 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1695.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (423876 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 3306.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000041.744.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (423876 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7121.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (44044 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1550.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (44044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (44044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 739.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (44044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (44044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (44044 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (44044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000411.745.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (44044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (329792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 11608.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (329792 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 1385.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (329792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3462.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (329792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1319.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (329792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 857.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (329792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 13884.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (329792 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5144.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000091.746.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (329792 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (254692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4278.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (254692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3234.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (254692 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (254692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1018.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (254692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (254692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (254692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000131.747.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (254692 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8965.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (263352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (263352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5543.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (263352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9269.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (263352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4424.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (263352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3344.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (263352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 684.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (263352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2765.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000111.748.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (263352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4108.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 67.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 285.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 265.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 597.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000601.74.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16988 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (304464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10717.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.5e-34 106.0 15.8 6.5e-34 106.0 15.8 5.1 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 106.0 15.8 1.1e-34 6.5e-34 1 155 [. 3461 3639 .. 3461 3640 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (304464 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.08u 0.01s 00:00:00.09 Elapsed: 00:00:00.09 # Mc/sec: 527.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (304464 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.10u 0.01s 00:00:00.11 Elapsed: 00:00:00.11 # Mc/sec: 1165.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (304464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (304464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 791.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (304464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1217.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (304464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3196.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (304464 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5115.00 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000101.749.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (341406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4335.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (341406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5735.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (341406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12017.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (341406 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 4791.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (341406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3584.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (341406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (341406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5325.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000061.750.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (341406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1365.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (68134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (68134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1144.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (68134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 272.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (68134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (68134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (68134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (68134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2868.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000331.751.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (68134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2398.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-26 80.0 0.0 9.4e-24 73.1 0.0 2.4 1 frame_1 1.3e-18 56.3 0.0 1.8e-18 55.9 0.0 1.2 1 frame_6 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.1 0.0 3.1e-24 9.4e-24 1 168 [] 22894 23032 .. 22894 23032 .. 0.90 >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.9 0.0 5.9e-19 1.8e-18 2 167 .. 19123 19291 .. 19122 19292 .. 0.95 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (254780 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 2 (0.333333); expected 0.0 (0.001) Passed Fwd filter: 2 (0.333333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.08u 0.01s 00:00:00.09 Elapsed: 00:00:00.09 # Mc/sec: 475.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (254780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (254780 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 1337.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (254780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (254780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8968.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (254780 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3974.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (254780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10726.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (254780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1320.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000121.752.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1175.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (214420 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3602.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (214420 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2251.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (214420 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2723.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (214420 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 557.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (214420 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (214420 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3344.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (214420 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000171.753.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (214420 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7547.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (181394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2829.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (181394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7636.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (181394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (181394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (181394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (181394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6385.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (181394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3047.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000191.754.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (181394 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2303.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (432638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7268.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (432638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (432638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 15228.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (432638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5494.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (432638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1730.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (432638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9107.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (432638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000031.755.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (432638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6749.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (340060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (340060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (340060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 14316.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (340060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11970.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (340060 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5304.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (340060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3570.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (340060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000081.756.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (340060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 573.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1293.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000431.757.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36752 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 28.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000531.758.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10894 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 190.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 762.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18122 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18122 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000581.75.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (116320 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 302.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (116320 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1814.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (116320 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1221.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (116320 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 465.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (116320 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (116320 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4897.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (116320 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000271.759.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (116320 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (51352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 133.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (51352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (51352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 801.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (51352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (51352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 862.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (51352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 205.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (51352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000391.760.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (51352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (49202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (49202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (49202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 624.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (49202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 767.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (49202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1731.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (49202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (49202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000401.761.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (49202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (87350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (87350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 917.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (87350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 227.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-19 58.3 0.0 4.7e-19 57.8 0.0 1.2 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.8 0.0 7.8e-20 4.7e-19 2 168 .] 2899 3061 .. 2898 3061 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (87350 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.03 # Mc/sec: 489.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (87350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1362.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (87350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (87350 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (87350 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3677.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (38358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (38358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000311.762.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (38358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 737.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 183.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000491.763.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 143.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 387.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 96.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 23.91 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000541.764.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 323.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18026 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18026 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 302.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18026 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 281.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18026 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18026 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18026 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18026 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000481.765.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18026 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16450 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 65.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16450 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 692.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16450 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16450 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16450 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16450 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16450 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000501.766.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16450 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (174110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2716.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-13 38.6 2.8 2.7e-13 38.0 2.8 1.1 1 frame_6 Domain annotation for each sequence: >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.0 2.8 4.6e-14 2.7e-13 56 142 .. 18501 18584 .. 18485 18597 .. 0.87 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (174110 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.12u 0.01s 00:00:00.13 Elapsed: 00:00:00.12 # Mc/sec: 610.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (174110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 696.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (174110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2925.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (174110 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 452.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (174110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (174110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2211.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000211.767.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (174110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6128.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (624298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7928.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (624298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6555.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (624298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1623.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (624298 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.03 # Mc/sec: 8760.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (624298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9739.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (624298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2497.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (624298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10488.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000021.768.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (624298 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 21975.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (84502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (84502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2974.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (84502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3557.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (84502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1318.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (84502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (84502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (84502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000431.76.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (84502 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (388044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4074.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (388044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 13659.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (388044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1008.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (388044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (388044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1552.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (388044 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 16336.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (388044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6519.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000051.769.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (388044 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4928.16 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (201406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3383.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (201406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2557.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (201406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2114.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (201406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (201406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8479.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (201406 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 523.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (201406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3141.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000181.770.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (201406 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7089.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1134.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26946 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 948.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000461.771.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (108306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3812.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (108306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (108306 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1689.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (108306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1137.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (108306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4559.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (108306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1375.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (108306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 281.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000291.772.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (108306 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (33212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (33212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1169.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (33212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (33212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (33212 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (33212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (33212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000451.773.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (33212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (123910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 322.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (123910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1933.00 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (123910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (123910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (123910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4361.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (123910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (123910 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5216.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000251.774.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (123910 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (243874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4097.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (243874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 975.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (243874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3097.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (243874 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 4292.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (243874 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3804.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (243874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 634.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (243874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10267.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000151.775.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (243874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (11870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (11870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 30.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (11870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 417.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (11870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (11870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 47.48 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (11870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (11870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000521.776.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (11870 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (71070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (71070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (71070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1193.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (71070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2501.66 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (71070 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1108.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (71070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (71070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000321.777.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (71070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (151832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (151832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 607.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (151832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6392.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (151832 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2368.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (151832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1928.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (151832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1594.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (151832 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2550.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000231.778.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (151832 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 1781.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 24.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 328.91 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 393.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 156.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000641.77.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (9344 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (58860 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 747.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (58860 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 153.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (58860 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (58860 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (58860 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (58860 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2478.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (58860 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000361.779.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (58860 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2071.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (893130 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 9400.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (893130 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 10479.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (893130 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3572.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (893130 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2322.14 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (893130 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 13932.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (893130 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11342.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (893130 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9377.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000011.780.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (893130 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 15004.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (66672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 266.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (66672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (66672 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2806.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (66672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (66672 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1120.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (66672 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (66672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 700.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000351.781.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (66672 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (102890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 411.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (102890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (102890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (102890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (102890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (102890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (102890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4331.67 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000301.782.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (102890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1728.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (248948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4182.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (248948 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 995.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (248948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (248948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2613.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (248948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 10480.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (248948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 8762.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (248948 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3883.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000141.783.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (248948 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3161.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (142020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1491.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (142020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (142020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5979.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (142020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (142020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (142020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-24 73.8 0.0 9.1e-24 73.1 0.0 1.4 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.1 0.0 1.5e-24 9.1e-24 2 167 .. 8873 9052 .. 8872 9053 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (142020 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 795.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (142020 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000241.784.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1322.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13352 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13352 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000511.785.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (67550 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (67550 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2377.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (67550 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1053.78 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (67550 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 709.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (67550 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (67550 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (67550 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000341.786.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (67550 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (122988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (122988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2066.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (122988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (122988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 319.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (122988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (122988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (122988 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1561.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000261.787.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (122988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (340708 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3577.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (340708 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 885.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (340708 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 7171.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (340708 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1362.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (340708 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4326.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-13 37.6 0.0 1.1e-12 37.0 0.0 1.2 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.0 0.0 1.9e-13 1.1e-12 3 167 .. 13239 13427 .. 13238 13428 .. 0.82 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (340708 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.06u 0.01s 00:00:00.06 Elapsed: 00:00:00.06 # Mc/sec: 953.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (340708 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 1771.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (340708 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11992.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-50 159.9 0.0 4.8e-50 159.3 0.0 1.2 1 AOIprotein4 Domain annotation for each sequence: >> AOIprotein4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 159.3 0.0 8.1e-51 4.8e-50 6 321 .. 2625 2958 .. 2623 2959 .. 0.80 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41124 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 441.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1184.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000071.788.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-50 159.9 0.0 4.8e-50 159.3 0.0 1.2 1 AOIprotein4 Domain annotation for each sequence: >> AOIprotein4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 159.3 0.0 8.1e-51 4.8e-50 6 321 .. 2625 2958 .. 2623 2959 .. 0.80 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41124 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 331.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 92.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 143.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000521.78.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (170110 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2653.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (170110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (170110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 442.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (170110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7161.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (170110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (170110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5987.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (170110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 680.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000221.789.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (170110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2857.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (108988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (108988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3836.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (108988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 435.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (108988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (108988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (108988 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4588.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (108988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1700.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000281.790.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (108988 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1831.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35030 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35030 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 444.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000441.791.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (51624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2173.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (51624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 206.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (51624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (51624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (51624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 134.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (51624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 655.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (51624 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 805.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000381.792.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (51624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 867.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (230252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9693.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (230252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8104.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (230252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3591.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (230252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2924.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (230252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (230252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (230252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 921.01 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000161.793.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (230252 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (53660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (53660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (53660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (53660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (53660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 901.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (53660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 681.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (53660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000371.794.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (53660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 837.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-12 34.6 0.0 8.3e-11 31.0 0.0 2.1 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.0 0.0 1.4e-11 8.3e-11 5 168 .] 8312 8452 .. 8308 8452 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (174516 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.07u 0.01s 00:00:00.08 Elapsed: 00:00:00.07 # Mc/sec: 418.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (174516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (174516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7347.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (174516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (174516 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 698.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (174516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (174516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1832.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (174516 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2722.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000201.795.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (39460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 102.60 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (39460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (39460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (39460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 414.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (39460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (39460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (39460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000421.796.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (39460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 366.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 87.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21842 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 768.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 229.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSFU010000471.797.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (231250 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3607.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (231250 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 601.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (231250 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8140.00 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (231250 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2428.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (231250 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9735.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (231250 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2936.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-11 33.9 0.0 1.1e-10 30.5 0.0 2.1 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.5 0.0 1.8e-11 1.1e-10 5 168 .] 18013 18153 .. 18009 18153 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (231250 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.06u 0.01s 00:00:00.06 Elapsed: 00:00:00.07 # Mc/sec: 555.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (231250 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 462.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1314.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1314.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000151.798.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 239.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14238 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JH5946011.7.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (38438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (38438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (38438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1353.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (38438 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 599.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (38438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (38438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 488.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (38438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1618.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_JAEW010000511.79.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (38438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 99.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 135.22 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000301.799.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (198546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 516.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (198546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (198546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6988.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (198546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (198546 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4179.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (198546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3335.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (198546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000181.800.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (198546 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3097.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (434436 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 18289.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (434436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6777.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (434436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (434436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (434436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 15292.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (434436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1129.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (434436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3649.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000091.801.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (434436 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5517.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (227312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3546.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (227312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 591.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (227312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9569.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (227312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3818.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (227312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2386.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (227312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8001.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (227312 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 909.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000161.802.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (227312 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (225622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (225622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 902.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (225622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7941.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (225622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3519.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (225622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9498.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (225622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3790.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (225622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2865.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000171.803.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (225622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (673862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (673862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 9456.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (673862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 11859.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (673862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5660.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (673862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7075.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (673862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1752.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (673862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2695.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000021.804.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (673862 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10512.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (299106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3140.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (299106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5024.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (299106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 6296.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (299106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (299106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (299106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3798.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (299106 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4666.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000141.805.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (299106 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5264.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (179746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7567.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (179746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2282.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (179746 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.02 # Mc/sec: 1402.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (179746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3019.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (179746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1887.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (179746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (179746 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000191.806.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (179746 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 718.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (1111052 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 8666.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (1111052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2888.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (1111052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 19554.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (1111052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 23387.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (1111052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11666.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (1111052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 14110.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (1111052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 9332.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000011.807.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (1111052 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 2222.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (29996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (29996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (29996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1262.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (29996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (29996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (29996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (29996 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000281.808.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (29996 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1805.16 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 668.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000491.80.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42878 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (476570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8006.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (476570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 8387.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (476570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6052.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (476570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1906.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (476570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7434.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (476570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (476570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1239.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000071.809.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (476570 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 20063.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (668322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2673.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (668322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (668322 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.06 # Mc/sec: 4689.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (668322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 4243.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (668322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10425.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (668322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 11762.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (668322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7017.38 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000031.810.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (668322 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 5613.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (109284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1704.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (109284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1387.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (109284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 284.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (109284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (109284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3846.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (109284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (109284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4600.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000211.811.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (109284 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (334504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (334504 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.11u 0.01s 00:00:00.12 Elapsed: 00:00:00.12 # Mc/sec: 1173.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (334504 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5218.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (334504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11774.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (334504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (334504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4248.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (334504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000121.812.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (334504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5619.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (519780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 10941.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (519780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9148.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (519780 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1351.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (519780 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.06 # Mc/sec: 1455.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (519780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6601.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (519780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8108.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (519780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000061.813.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (519780 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5457.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (343822 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 2681.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (343822 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1375.29 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (343822 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3610.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (343822 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (343822 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (343822 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5776.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (343822 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 14474.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000111.814.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (343822 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6051.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (65352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 829.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (65352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 686.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (65352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (65352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 169.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (65352 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (65352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (65352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2751.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000261.815.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (65352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (578246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 10177.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.2e-13 37.4 2.8 9.3e-13 36.3 2.8 1.4 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.3 2.8 1.5e-13 9.3e-13 56 142 .. 15258 15341 .. 15242 15354 .. 0.87 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (578246 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.28u 0.02s 00:00:00.30 Elapsed: 00:00:00.28 # Mc/sec: 869.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (578246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6071.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (578246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3671.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (578246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2312.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (578246 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4510.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (578246 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1503.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000041.816.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (578246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4857.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (566634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7196.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (566634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1473.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (566634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9972.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (566634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2266.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (566634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5949.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (566634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 11927.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (566634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8839.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000051.817.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (566634 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9519.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (85150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (85150 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2997.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (85150 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1430.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (85150 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (85150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (85150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1081.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (85150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000241.818.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (85150 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 894.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (271246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 705.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (271246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2848.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (271246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 11419.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (271246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4231.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (271246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (271246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (271246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9547.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000141.81.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (271246 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4556.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (456060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 16053.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (456060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5791.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (456060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1824.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (456060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1185.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (456060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 19200.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (456060 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (456060 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 2371.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-25 78.4 0.0 1.7e-23 72.2 0.0 2.4 1 frame_4 2.8e-18 55.3 0.0 3.8e-18 54.8 0.0 1.2 1 frame_2 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.2 0.0 5.7e-24 1.7e-23 1 168 [] 59379 59517 .. 59379 59517 .. 0.90 >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.8 0.0 1.3e-18 3.8e-18 2 167 .. 16185 16353 .. 16184 16354 .. 0.95 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (456060 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 2 (0.333333); expected 0.0 (0.001) Passed Fwd filter: 2 (0.333333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.17 # Mc/sec: 450.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1180.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1320.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000081.819.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (92274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1171.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (92274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (92274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (92274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1550.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (92274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1439.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (92274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3884.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (92274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000221.820.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (92274 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (141886 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (141886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (141886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 368.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (141886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1489.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (141886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 567.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (141886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (141886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2383.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000201.821.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (141886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (20898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (20898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (20898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (20898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 735.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (20898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (20898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (20898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 83.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000291.822.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (20898 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (373764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.1e-34 105.7 15.8 8.1e-34 105.7 15.8 2.4 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 105.7 15.8 1.3e-34 8.1e-34 1 155 [. 56896 57074 .. 56896 57075 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (373764 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.07u 0.01s 00:00:00.08 Elapsed: 00:00:00.06 # Mc/sec: 971.79 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (373764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 7867.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (373764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3924.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (373764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4746.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (373764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6279.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (373764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 971.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (373764 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13156.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000101.823.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (49010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (49010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 622.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (49010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 127.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (49010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2063.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (49010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (49010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (49010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-19 59.2 0.0 2.5e-19 58.7 0.0 1.2 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 58.7 0.0 4.2e-20 2.5e-19 2 168 .] 1285 1447 .. 1284 1447 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (49010 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 411.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (28674 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 923.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (28674 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000271.824.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (28674 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (86720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1456.90 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (86720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 910.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (86720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3650.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (86720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (86720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (86720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3052.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (86720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1352.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000231.825.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (86720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (308192 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3914.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (308192 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10848.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (308192 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 801.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (308192 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4807.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (308192 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (308192 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 12974.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (308192 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3236.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-23 72.5 0.0 2e-23 72.0 0.0 1.2 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.0 0.0 3.3e-24 2e-23 2 167 .. 23578 23757 .. 23577 23758 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (308192 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.07 # Mc/sec: 739.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000131.826.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (77388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1207.25 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (77388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 201.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (77388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (77388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 982.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (77388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (77388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (77388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2724.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QSJQ010000251.827.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (77388 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1300.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (16068 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (16068 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 41.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (16068 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (16068 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (16068 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (16068 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (16068 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000641.828.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (16068 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 269.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (45198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (45198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (45198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (45198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1590.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (45198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (45198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (45198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 474.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000481.82.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (45198 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 574.01 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (175580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (175580 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2739.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (175580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (175580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (175580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7391.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (175580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (175580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6180.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000231.829.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (175580 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1843.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (121424 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2039.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (121424 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1274.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (121424 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (121424 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1542.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (121424 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1894.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (121424 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (121424 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000301.830.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (121424 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (63248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (63248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 803.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (63248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (63248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (63248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (63248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 664.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (63248 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000461.831.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (63248 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 986.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (298514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 776.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (298514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5253.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (298514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6283.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (298514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5015.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (298514 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4656.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (298514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1194.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (298514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000071.832.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (298514 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3791.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (98106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (98106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1530.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (98106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (98106 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (98106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (98106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1245.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (98106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000391.833.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (98106 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1648.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (54884 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 922.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (54884 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 856.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (54884 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (54884 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 219.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (54884 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (54884 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2310.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (54884 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1931.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000491.834.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (54884 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14368 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 505.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14368 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14368 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14368 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 241.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14368 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14368 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14368 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000651.835.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14368 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (337968 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5272.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (337968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5677.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (337968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1351.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (337968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 5948.24 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (337968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3548.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (337968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 878.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (337968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4292.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000051.836.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (337968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 14228.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (216346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (216346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3634.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (216346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3807.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (216346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (216346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (216346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (216346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 562.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000151.837.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (216346 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9108.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (86766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (86766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (86766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (86766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (86766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3054.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (86766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3652.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (86766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1101.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000421.838.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (86766 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-20 61.1 0.0 5.9e-20 60.7 0.0 1.2 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.7 0.0 9.9e-21 5.9e-20 2 168 .] 383 545 .. 382 545 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13748 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 230.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 578.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (13742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (13742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000611.83.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (13742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (263234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4422.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (263234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 9265.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (263234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (263234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3343.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (263234 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 11082.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (263234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1052.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (263234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4106.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000091.839.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (263234 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2763.96 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (183146 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7710.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (183146 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2325.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (183146 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6446.74 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (183146 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (183146 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (183146 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (183146 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1923.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000211.840.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (183146 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2857.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25208 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 423.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25208 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000601.841.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25208 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (154476 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5437.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (154476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6503.44 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (154476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (154476 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 1204.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (154476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1961.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (154476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (154476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 401.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000261.842.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (154476 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (109890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (109890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (109890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (109890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1846.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (109890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (109890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (109890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3868.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000331.843.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (109890 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1395.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (67682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (67682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1137.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (67682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (67682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (67682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2849.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (67682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (67682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000451.844.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (67682 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 175.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 531.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 82.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 126.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1114.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1332.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31660 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000551.845.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31660 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (257400 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10836.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (257400 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (257400 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4324.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (257400 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2702.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (257400 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (257400 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (257400 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 9060.48 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000111.846.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (257400 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4015.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (184618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6498.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (184618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 738.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (184618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (184618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (184618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (184618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (184618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000201.847.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (184618 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (235100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 940.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (235100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (235100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (235100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9897.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (235100 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3667.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (235100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8275.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (235100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2468.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000121.848.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (235100 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (75416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (75416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (75416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (75416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (75416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3175.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (75416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (75416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2654.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000371.84.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (75416 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (95056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (95056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 247.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (95056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3345.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (95056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4001.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (95056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (95056 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1482.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (95056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000401.849.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (95056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (511744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5373.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (511744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 10772.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (511744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9006.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (511744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2046.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (511744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1330.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-23 72.2 0.1 4.8e-22 67.5 0.1 2.2 1 frame_1 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.5 0.1 8e-23 4.8e-22 1 168 [] 60160 60298 .. 60160 60298 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (511744 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.10u 0.01s 00:00:00.11 Elapsed: 00:00:00.11 # Mc/sec: 781.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (511744 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6499.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-33 104.8 18.2 1.5e-33 104.8 18.2 4.3 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 104.8 18.2 2.5e-34 1.5e-33 2 155 .. 74650 74827 .. 74648 74828 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (511744 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.08u 0.01s 00:00:00.09 Elapsed: 00:00:00.09 # Mc/sec: 887.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1175.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000011.850.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (41058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 143.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (441438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 7416.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (441438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 7769.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (441438 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 4646.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (441438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5606.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (441438 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1765.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (441438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4635.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (441438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1147.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000041.851.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (441438 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3443.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (148296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6243.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (148296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1883.36 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (148296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (148296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (148296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2313.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (148296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5220.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (148296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1557.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000281.852.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (148296 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2491.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (41762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (41762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 167.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (41762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (41762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (41762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (41762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 438.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (41762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1470.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000531.853.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (41762 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (200788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3132.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (200788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3373.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (200788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7067.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (200788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2550.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (200788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 803.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (200788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 522.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (200788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000171.854.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (200788 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8453.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (26586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (26586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (26586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (26586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (26586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (26586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 935.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (26586 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 446.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000581.855.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (26586 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 106.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 27.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 114.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000701.856.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6838 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (98942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (98942 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 831.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (98942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 395.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (98942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (98942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1038.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (98942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1543.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (98942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3482.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000381.857.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (98942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1256.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (112064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3944.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (112064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (112064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (112064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (112064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (112064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (112064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000321.858.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (112064 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1748.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (202866 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 3408.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (202866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2576.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (202866 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 7140.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (202866 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4270.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (202866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 811.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (202866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (202866 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2130.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000181.85.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (202866 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 1582.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (70392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (70392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (70392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2477.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (70392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 893.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (70392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (70392 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1098.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (70392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 183.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000441.859.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (70392 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (177802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 462.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (177802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1866.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (177802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2258.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (177802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6258.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (177802 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2773.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (177802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-23 70.1 0.2 1.2e-20 63.0 0.2 2.3 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.0 0.2 2e-21 1.2e-20 1 168 [] 12372 12514 .. 12372 12514 .. 0.87 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (177802 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.03 # Mc/sec: 995.69 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (177802 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1176.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000221.860.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27702 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27702 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1166.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27702 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27702 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 465.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27702 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 975.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27702 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27702 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000571.861.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27702 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (198144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (198144 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3091.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (198144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2516.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (198144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3328.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (198144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 792.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (198144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8341.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (198144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000181.862.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (198144 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 515.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (491700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1966.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (491700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 17307.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (491700 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 5175.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (491700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1278.42 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (491700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6244.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (491700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7670.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (491700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5162.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000031.863.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (491700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8260.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (28278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (28278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (28278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (28278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 995.39 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (28278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (28278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 359.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (28278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000561.864.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (28278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 475.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (55288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (55288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 862.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (55288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (55288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 928.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (55288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 702.16 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (55288 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (55288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1946.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000481.865.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (55288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 143.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (234664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (234664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2980.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (234664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3942.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (234664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 9879.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (234664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 610.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (234664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3660.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (234664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 938.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000131.866.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (234664 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (186358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2366.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (186358 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3922.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (186358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (186358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 484.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (186358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (186358 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (186358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000191.867.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (186358 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1956.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (332632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (332632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (332632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 864.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (332632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5854.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (332632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 14003.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (332632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5588.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (332632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1330.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000061.868.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (332632 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5189.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 606.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000511.86.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36128 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 144.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 305.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18202 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000631.869.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 47.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (106396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3745.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (106396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4479.27 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (106396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (106396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (106396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (106396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1787.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (106396 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000351.870.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (106396 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (94318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (94318 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.01 # Mc/sec: 3970.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (94318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (94318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (94318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (94318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (94318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000411.871.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (94318 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (57700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (57700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2031.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (57700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 732.79 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (57700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 150.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (57700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 230.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (57700 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 900.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (57700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000471.872.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (57700 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2429.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (37366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (37366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 474.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (37366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1315.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (37366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1573.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (37366 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 582.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (37366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (37366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000541.873.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (37366 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (234606 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3659.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (234606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8258.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (234606 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2979.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (234606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2463.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (234606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 938.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (234606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9876.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (234606 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 609.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000141.874.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-12 36.0 0.0 6.6e-09 24.8 0.0 2.2 0 frame_3 Domain annotation for each sequence: >> frame_3 [No individual domains that satisfy reporting thresholds (although complete target did)] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (234606 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 # Mc/sec: 985.35 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (100774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1693.00 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (100774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (100774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 403.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (100774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1279.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (100774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (100774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (100774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000361.875.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (100774 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3547.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 86.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000691.876.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 240.84 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 884.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21000 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000611.877.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21000 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (213624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (213624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7519.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (213624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8993.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (213624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 555.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (213624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (213624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3588.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (213624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000161.878.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (213624 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3332.53 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (307982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4804.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (307982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3233.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (307982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12966.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (307982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5174.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (307982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3911.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (307982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 800.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (307982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10840.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000111.87.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (307982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1231.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (85266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (85266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (85266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (85266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3001.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (85266 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (85266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (85266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000431.879.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (85266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3589.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (118010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (118010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1982.57 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (118010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (118010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4968.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (118010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (118010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1498.73 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (118010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000311.880.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (118010 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (50348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (50348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (50348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 528.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (50348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1772.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (50348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (50348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (50348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000511.881.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (50348 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (51644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 542.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (51644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 655.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (51644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1817.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (51644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (51644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (51644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (51644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000501.882.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (51644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (152398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (152398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1600.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (152398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1935.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (152398 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5364.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (152398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (152398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (152398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6415.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000271.883.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (152398 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (265340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4457.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (265340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9339.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (265340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 11170.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (265340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (265340 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4139.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (265340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (265340 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1061.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000081.884.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (265340 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2786.07 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42886 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1805.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42886 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 171.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 450.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000521.885.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42886 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (175310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (175310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (175310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6170.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (175310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2945.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (175310 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (175310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (175310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000241.886.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (175310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7380.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (158526 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5580.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (158526 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6673.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (158526 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2013.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (158526 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2473.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (158526 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-47 148.3 0.0 4.3e-24 74.2 0.0 2.2 2 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.1 0.0 3.2e-24 1.9e-23 2 167 .. 7327 7506 .. 7326 7507 .. 0.94 2 ! 74.2 0.0 7.2e-25 4.3e-24 2 168 .] 25543 25710 .. 25542 25710 .. 0.90 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (158526 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 887.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (158526 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 412.17 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (158526 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (25266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (25266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 813.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (25266 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1322.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1322.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000251.887.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (25698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (25698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 904.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (25698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (25698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 269.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (25698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 326.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (25698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 431.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (25698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000591.888.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (25698 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (382470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 8050.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (382470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5966.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-23 72.2 0.0 2.5e-23 71.7 0.0 1.2 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 71.7 0.0 4.1e-24 2.5e-23 2 167 .. 17926 18105 .. 17925 18106 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (382470 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.08u 0.01s 00:00:00.09 Elapsed: 00:00:00.09 # Mc/sec: 713.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (382470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1529.88 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (382470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (382470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4015.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (382470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4857.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (382470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 13462.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000041.88.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 57.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000661.889.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14352 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000671.890.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (100236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1563.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (100236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (100236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (100236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (100236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3528.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (100236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 260.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (100236 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4219.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000371.891.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (100236 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (259848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (259848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4365.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (259848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 9146.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (259848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2728.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (259848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3300.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (259848 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 5469.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (259848 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000101.892.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (259848 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4053.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 111.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000681.893.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10608 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 165.48 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 204.85 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 821.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 304.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000621.894.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (492668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1970.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (492668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 10370.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (492668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 17341.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (492668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5173.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (492668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 8276.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (492668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7685.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (492668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6256.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000021.895.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (492668 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1280.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (6516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 68.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (6516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (6516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.4e-24 73.9 0.0 7.2e-24 73.5 0.0 1.2 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.5 0.0 1.2e-24 7.2e-24 2 168 .] 871 1048 .. 870 1048 .. 0.86 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (6516 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 109.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (6516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (6516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (6516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (6516 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 82.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (6510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (6510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000711.896.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (6510 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (107438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 429.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (107438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (107438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (107438 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1676.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (107438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (107438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (107438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000341.897.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (107438 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (131220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4618.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (131220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (131220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (131220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1377.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (131220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (131220 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5524.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (131220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRKM010000291.898.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (131220 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2047.03 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (158162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (158162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2657.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (158162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (158162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (158162 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2467.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (158162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (158162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6658.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_KB9033611.8.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (158162 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5567.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (182270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 729.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (182270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1913.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (182270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6415.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (182270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7e-12 34.5 0.0 8.7e-11 30.9 0.0 2.1 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.9 0.0 1.4e-11 8.7e-11 5 168 .] 6316 6456 .. 6312 6456 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (182270 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 765.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (182270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (182270 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7673.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (182270 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2843.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1314.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000211.89.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (149548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1899.26 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (149548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 598.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (149548 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2332.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (149548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1570.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (149548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (149548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (149548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6295.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000231.899.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (149548 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5264.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 45.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 610.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 220.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000691.900.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17338 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (108872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 435.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (108872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1829.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (108872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (108872 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4583.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (108872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (108872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (108872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000321.901.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (108872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (247880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4164.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (247880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 8725.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (247880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3148.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (247880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10435.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (247880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (247880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (247880 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3866.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000091.902.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (247880 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (36680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (36680 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (36680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (36680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (36680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (36680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (36680 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 572.21 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000571.903.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (36680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (51122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (51122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (51122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (51122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 858.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (51122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (51122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1799.49 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.8e-06 13.3 0.0 1.3e-05 12.7 0.0 1.1 0 frame_3 Domain annotation for each sequence: >> frame_3 [No individual domains that satisfy reporting thresholds (although complete target did)] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (51122 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.03 # Mc/sec: 717.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000501.904.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (51122 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (96578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (96578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3399.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (96578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (96578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1506.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (96578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (96578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 386.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (96578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000351.905.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (96578 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (302742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10656.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (302742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 787.13 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (302742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5086.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (302742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4722.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (302742 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6372.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (302742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (302742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3844.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000071.906.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (302742 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 221.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 734.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 69.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000681.907.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (30680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 79.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (30680 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 478.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (30680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (30680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (30680 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (30680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1291.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (30680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000631.908.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (30680 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (14066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (14066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (14066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 178.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (14066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 236.31 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (14066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 36.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (14066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 495.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (14066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000601.90.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (14066 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (66384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (66384 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (66384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (66384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2336.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (66384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2794.77 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (66384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (66384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000441.909.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (66384 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (184372 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1935.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (184372 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7762.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (184372 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2876.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (184372 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 479.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (184372 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (184372 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (184372 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000151.910.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (184372 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (138652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (138652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2162.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (138652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (138652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (138652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5837.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (138652 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1760.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (138652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000281.911.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (138652 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 75.83 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 121.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7222 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000771.912.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7222 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (263314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (263314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (263314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4107.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (263314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (263314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 11085.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (263314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (263314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3344.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000081.913.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (263314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 9268.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (181494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 471.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (181494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2831.31 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (181494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (181494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1905.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (181494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3049.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (181494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6388.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (181494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000161.914.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (181494 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (13090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (13090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (13090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (13090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (13090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (13090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (13090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000711.915.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (13090 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (374984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4762.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (374984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13199.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (374984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (374984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 974.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (374984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6299.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (374984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (374984 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 15786.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000041.916.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (374984 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5849.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (33132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 556.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (33132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (33132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (33132 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 516.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (33132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1394.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (33132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (33132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000611.917.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (33132 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (115210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1209.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (115210 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1797.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (115210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1935.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (115210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (115210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (115210 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1463.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (115210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000311.918.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (115210 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 460.84 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (34376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1210.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (34376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (34376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 137.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (34376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 360.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (34376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1447.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (34376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (34376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000521.91.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (34376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (38950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1371.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (38950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (38950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (38950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1639.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (38950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (38950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (38950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000561.919.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (38950 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 161.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12732 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 198.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 536.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000731.920.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12732 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (136310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (136310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 545.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (136310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 354.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (136310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (136310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2290.01 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (136310 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (136310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000291.921.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (136310 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5738.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000751.922.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (8748 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 307.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 323.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 30.70 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 270.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000761.923.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (7676 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (117282 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (117282 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4937.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (117282 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (117282 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (117282 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (117282 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (117282 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000301.924.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (117282 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 304.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (21048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (21048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (21048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (21048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 353.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (21048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 886.12 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (21048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (21048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000651.925.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (21048 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 54.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 755.86 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 280.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000671.926.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17954 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 631.98 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (55216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 861.37 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (55216 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (55216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (55216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (55216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (55216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (55216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000471.927.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (55216 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (79650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2803.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (79650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (79650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1011.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (79650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (79650 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1242.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (79650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (79650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000371.928.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (79650 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (30638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 79.66 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (30638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (30638 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (30638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (30638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (30638 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (30638 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000541.92.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (30638 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 122.55 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (153980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2402.09 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (153980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 615.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (153980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6482.56 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (153980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (153980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (153980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2586.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (153980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000221.929.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (153980 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (31474 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (31474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (31474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (31474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (31474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (31474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 528.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (31474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1325.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000621.930.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (31474 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (41186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (41186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (41186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (41186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (41186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (41186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 642.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (41186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000551.931.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (41186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (186114 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3275.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (186114 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2903.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (186114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (186114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (186114 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7835.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (186114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 483.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (186114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 744.46 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000141.932.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (186114 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2363.65 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (163480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (163480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6882.51 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (163480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2076.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (163480 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2550.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (163480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (163480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (163480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5754.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000191.933.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (163480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (361942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4596.66 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (361942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6080.63 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (361942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 941.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (361942 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5646.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (361942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 7618.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (361942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 12740.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (361942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3800.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000051.934.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (361942 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1447.77 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (44452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1564.71 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (44452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (44452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (44452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (44452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (44452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (44452 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000531.935.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (44452 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (142872 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 571.49 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (142872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (142872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (142872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (142872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (142872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (142872 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000261.936.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (142872 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (64460 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-27 84.0 0.0 1.8e-14 42.9 0.0 2.5 2 frame_1 3.7e-19 58.1 0.0 4.9e-19 57.7 0.0 1.2 1 frame_6 Domain annotation for each sequence: >> frame_1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.9 0.0 5.9e-15 1.8e-14 1 54 [. 5117 5170 .. 5117 5176 .. 0.93 2 ! 39.2 0.1 7.9e-14 2.4e-13 81 168 .] 5173 5255 .. 5167 5255 .. 0.92 >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 57.7 0.0 1.6e-19 4.9e-19 2 167 .. 5180 5348 .. 5179 5349 .. 0.95 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (64460 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 2 (0.333333); expected 0.1 (0.02) Passed Vit filter: 2 (0.333333); expected 0.0 (0.001) Passed Fwd filter: 2 (0.333333); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.05 # Mc/sec: 216.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (64460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (64460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (64460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2268.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (64460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (64460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (64460 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 676.83 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41004 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40488 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1303.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1298.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000461.937.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40314 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (306490 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 10788.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (306490 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 796.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (306490 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3892.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (306490 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (306490 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4781.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (306490 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3218.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (306490 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.06 # Mc/sec: 858.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000061.938.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (306490 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6451.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (144432 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5084.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (144432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (144432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (144432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1834.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (144432 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2253.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (144432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (144432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000251.93.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (144432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6080.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 181.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 43.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000741.939.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10820 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (77212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (77212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (77212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (77212 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1204.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (77212 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 200.75 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (77212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (77212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000381.940.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (77212 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (147480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1548.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (147480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5191.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (147480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (147480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2477.66 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (147480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6208.91 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (147480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (147480 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-34 107.0 15.8 3.1e-34 107.0 15.8 3.3 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 107.0 15.8 5.1e-35 3.1e-34 1 155 [. 2933 3111 .. 2933 3112 .. 0.92 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (147480 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 766.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/httB.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000241.941.httB.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: httB [M=35] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (35 nodes) Target sequences: 6 (38658 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (42386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (42386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (42386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 712.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (42386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 169.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (42386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (42386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (42386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 110.20 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000541.942.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (42386 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (34238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 534.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (34238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 89.02 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (34238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1441.42 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (34238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (34238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 434.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (34238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (34238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 136.95 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000601.943.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (34238 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (19982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (19982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 841.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (19982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (19982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (19982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (19982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (19982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 253.77 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000661.944.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (19982 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (211498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3553.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (211498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (211498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 845.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (211498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (211498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3299.37 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (211498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (211498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8904.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000121.945.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (211498 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (169448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7133.76 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (169448 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (169448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (169448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2151.99 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (169448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1779.20 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (169448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (169448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000181.946.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (169448 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2846.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (147278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (147278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2297.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (147278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6200.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.5e-24 73.8 0.0 9.2e-24 73.1 0.0 1.4 1 frame_3 Domain annotation for each sequence: >> frame_3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 73.1 0.0 1.5e-24 9.2e-24 2 167 .. 9188 9367 .. 9187 9368 .. 0.94 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (147278 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.05 # Mc/sec: 494.85 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (147278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (147278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 589.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (147278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (147278 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5184.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1322.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000251.947.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (446112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1159.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (446112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5665.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (446112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4684.18 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (446112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 15703.14 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (446112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7494.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (446112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (446112 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6959.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000031.948.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (446112 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 18781.32 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (47622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (47622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 123.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (47622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (47622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (47622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1676.29 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (47622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (47622 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000471.94.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (47622 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (215614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2738.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (215614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 560.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (215614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7589.61 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (215614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9077.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (215614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (215614 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3363.58 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (215614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3622.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000111.949.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (215614 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (203292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (203292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (203292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (203292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 8558.59 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (203292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2581.81 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (203292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 813.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (203292 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7155.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-19 57.1 0.0 1.1e-18 56.5 0.0 1.3 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.5 0.0 1.9e-19 1.1e-18 2 168 .] 5022 5184 .. 5021 5184 .. 0.89 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (203292 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.05u 0.01s 00:00:00.06 Elapsed: 00:00:00.06 # Mc/sec: 569.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1319.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000131.950.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40968 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1319.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (173520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (173520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (173520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2203.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (173520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (173520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (173520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (173520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 694.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000171.951.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (173520 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (71818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (71818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2527.99 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (71818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 912.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (71818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3023.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (71818 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (71818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (71818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 754.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000421.952.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (71818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1206.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (228186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3559.70 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (228186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 593.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (228186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2897.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (228186 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 2401.66 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (228186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (228186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 912.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (228186 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 4016.07 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000101.953.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (228186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3833.52 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (539874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9501.78 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (539874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (539874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 11364.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (539874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6856.40 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (539874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9069.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (539874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 8422.03 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (539874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5668.68 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000011.954.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (539874 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1403.67 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (12846 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (12846 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 540.82 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (12846 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (12846 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (12846 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (12846 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (12846 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000721.955.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (12846 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (17260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (17260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 289.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (17260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (17260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 181.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (17260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (17260 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (17260 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000701.956.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (17260 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (65056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (65056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (65056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2738.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (65056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 169.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (65056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-13 40.2 0.0 2e-13 39.5 0.0 1.3 1 frame_6 Domain annotation for each sequence: >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 39.5 0.0 3.3e-14 2e-13 3 167 .. 4977 5165 .. 4976 5166 .. 0.82 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (65056 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 546.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (65056 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (65056 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-50 159.9 0.0 4.8e-50 159.3 0.0 1.2 1 AOIprotein6 Domain annotation for each sequence: >> AOIprotein6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 159.3 0.0 8.1e-51 4.8e-50 6 321 .. 2625 2958 .. 2623 2959 .. 0.80 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41124 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 331.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41124 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000451.957.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-50 159.9 0.0 4.8e-50 159.3 0.0 1.2 1 AOIprotein6 Domain annotation for each sequence: >> AOIprotein6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 159.3 0.0 8.1e-51 4.8e-50 6 321 .. 2625 2958 .. 2623 2959 .. 0.80 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41124 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 # Mc/sec: 662.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (51186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (51186 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (51186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (51186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2154.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (51186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (51186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (51186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000491.958.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (51186 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (236192 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8313.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (236192 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3968.03 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (236192 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3684.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (236192 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (236192 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2480.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (236192 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (236192 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2999.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000151.95.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (236192 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9943.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (157720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6640.01 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (157720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2003.04 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (157720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (157720 residues searched) Passed MSV filter: 3 (0.5); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 2460.43 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (157720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (157720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-12 34.9 0.0 7.4e-11 31.1 0.0 2.1 1 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.1 0.0 1.2e-11 7.4e-11 5 168 .] 18675 18815 .. 18671 18815 .. 0.83 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (157720 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.03u 0.01s 00:00:00.04 Elapsed: 00:00:00.03 # Mc/sec: 883.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (157720 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000201.959.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40836 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (86574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3047.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (86574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 909.03 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (86574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 225.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (86574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 346.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (86574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (86574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (86574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000361.960.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (86574 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (142288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5990.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (142288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 369.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (142288 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2219.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (142288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (142288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (142288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5008.54 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (142288 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 569.15 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000271.961.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (142288 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1807.06 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (34326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (34326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (34326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (34326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (34326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (34326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (34326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000591.962.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (34326 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (106946 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (106946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4502.43 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (106946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (106946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (106946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (106946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3764.50 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (106946 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000331.963.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (106946 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (51376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (51376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2162.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (51376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (51376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (51376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (51376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 801.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (51376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 539.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000481.964.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (51376 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 652.48 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (76644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1195.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (76644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 973.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (76644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (76644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 804.76 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (76644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (76644 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (76644 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2697.87 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000391.965.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (76644 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (48592 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 758.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (48592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (48592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1710.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (48592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 510.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (48592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (48592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (48592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000521.966.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (48592 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2045.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (49058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (49058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (49058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 515.11 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (49058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (49058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (49058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (49058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000511.967.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (49058 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 765.30 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (74152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 3121.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (74152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (74152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (74152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (74152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (74152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (74152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000401.968.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (74152 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (30444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (30444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (30444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (30444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1071.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (30444 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (30444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 474.93 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (30444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000551.96.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (30444 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (475030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 9999.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (475030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7980.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (475030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6032.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (475030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 8360.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (475030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1235.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (475030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 4987.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (475030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1900.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000021.969.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (475030 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7410.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (154756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2599.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (154756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1624.94 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (154756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (154756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (154756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6515.23 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (154756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 5447.41 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (154756 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000211.970.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (154756 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 1207.10 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (99214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (99214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (99214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (99214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4176.91 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (99214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (99214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3492.33 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (99214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 257.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000341.971.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (99214 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (72408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3048.38 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (72408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (72408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (72408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (72408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (72408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (72408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 760.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000411.972.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (72408 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (27202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (27202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 957.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (27202 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (27202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 456.99 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (27202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 70.73 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (27202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 345.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (27202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 108.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000641.973.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (27202 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 285.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (67432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2838.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (67432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 708.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (67432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 175.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (67432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1132.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (67432 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1051.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (67432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 856.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (67432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2373.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000431.974.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (67432 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (34502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1452.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (34502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (34502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (34502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (34502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (34502 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (34502 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPC010000581.975.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (34502 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (41976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (41976 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (41976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1767.19 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (41976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 533.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (41976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (41976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (41976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 1477.56 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000451.976.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (41976 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (35330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 141.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (35330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (35330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 551.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (35330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (35330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (35330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1487.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (35330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000471.977.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (35330 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 448.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-12 34.4 0.1 1.4e-10 30.2 0.1 2.3 1 frame_4 Domain annotation for each sequence: >> frame_4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.2 0.1 2.4e-11 1.4e-10 4 168 .] 26555 26696 .. 26552 26696 .. 0.84 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (677930 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.14u 0.02s 00:00:00.16 Elapsed: 00:00:00.15 # Mc/sec: 759.28 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (677930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2711.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (677930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 8609.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (677930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 11931.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (677930 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 # Mc/sec: 7135.21 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (677930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1762.62 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (677930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 10575.71 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (677930 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7118.27 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000031.978.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40842 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (58434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (58434 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 911.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (58434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 742.11 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (58434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (58434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (58434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 233.74 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (58434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000421.97.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (58434 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (10470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (10470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (10470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 163.33 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (10470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (10470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (10470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 41.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (10470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000551.979.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (10470 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (91422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (91422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (91422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3218.05 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (91422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3848.87 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (91422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 365.69 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (91422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1426.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (91422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1535.89 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000291.980.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (91422 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (266992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 694.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (266992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (266992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 5620.18 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (266992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9398.12 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (266992 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4165.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (266992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4485.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (266992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000101.981.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (266992 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (209576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2200.55 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (209576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2661.62 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (209576 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3269.39 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (209576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 544.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (209576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 8823.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (209576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 7377.08 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (209576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3520.88 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000131.982.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (209576 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (138482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (138482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 553.93 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (138482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4874.57 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (138482 residues searched) Passed MSV filter: 2 (0.333333); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2160.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (138482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (138482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5830.09 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (138482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2326.50 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000211.983.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (138482 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (309362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5197.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (309362 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 4826.05 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (309362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (309362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (309362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3928.90 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (309362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (309362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1237.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000091.984.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (309362 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 804.34 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-22 69.1 0.0 2.3e-22 68.5 0.0 1.2 1 frame_5 Domain annotation for each sequence: >> frame_5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.5 0.0 3.9e-23 2.3e-22 2 168 .] 20287 20464 .. 20286 20464 .. 0.86 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (123024 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.05 # Mc/sec: 413.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (123024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1291.75 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (123024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (123024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1562.40 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (123024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (123024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1919.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (123024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 492.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (123024 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (21300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000231.985.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (21300 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 685.86 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (179364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1883.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (179364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (179364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (179364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2798.08 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (179364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (179364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 7551.22 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (179364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 717.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000141.986.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (179364 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 6313.61 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (18734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (18734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (18734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 292.25 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (18734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (18734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (18734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (18734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000521.987.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (18734 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (103808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (103808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (103808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1743.97 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (103808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (103808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (103808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1318.36 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (103808 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3654.04 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000251.988.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (103808 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (69814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (69814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (69814 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1089.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (69814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2457.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (69814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (69814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (69814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_NFIM010000381.98.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (69814 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2939.17 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (216504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 # Mc/sec: 3810.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (216504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (216504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 866.02 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (216504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2749.60 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (216504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (216504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (216504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000121.989.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (216504 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 9114.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (34582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (34582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (34582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (34582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (34582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (34582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (34582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000491.990.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (34582 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 580.98 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (397016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 8357.19 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (397016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 6193.45 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (397016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 13974.96 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (397016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1588.06 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (397016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (397016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1032.24 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (397016 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 5042.10 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-24 74.6 0.1 6.3e-23 70.4 0.1 2.1 1 frame_6 Domain annotation for each sequence: >> frame_6 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.4 0.1 1e-23 6.3e-23 1 168 [] 56613 56751 .. 56613 56751 .. 0.93 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (397016 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.11u 0.00s 00:00:00.11 Elapsed: 00:00:00.11 # Mc/sec: 606.35 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1314.53 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000051.991.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (40824 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (57616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 731.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (57616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2425.63 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (57616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (57616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 898.81 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (57616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 604.97 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (57616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (57616 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 230.46 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000371.992.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (57616 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 967.95 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (157808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2004.16 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (157808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (157808 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2461.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (157808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (157808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 6643.72 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (157808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.6e-47 148.2 0.0 4.3e-24 74.2 0.0 2.2 2 frame_2 Domain annotation for each sequence: >> frame_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.1 0.0 3.2e-24 1.9e-23 2 167 .. 7327 7506 .. 7326 7507 .. 0.94 2 ! 74.2 0.0 7.1e-25 4.3e-24 2 168 .] 25719 25886 .. 25718 25886 .. 0.90 Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (157808 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 1 (0.166667); expected 0.0 (0.001) Passed Fwd filter: 1 (0.166667); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 883.72 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (157808 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1322.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1322.45 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (41070 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1182.82 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (23492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 756.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02624.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.PF02624.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: YcaO [M=322] Accession: PF02624.18 Description: YcaO cyclodehydratase, ATP-ad Mg2+-binding Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (322 nodes) Target sequences: 6 (23492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF14028.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.tmp_proteins.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000151.993.PF14028.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Lant_dehydr_C [M=288] Accession: PF14028.8 Description: Lantibiotic biosynthesis dehydratase C-term Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (288 nodes) Target sequences: 6 (23492 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (313134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1252.54 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (313134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 3976.80 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (313134 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 6591.47 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (313134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 814.15 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (313134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 11022.32 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (313134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (313134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 4884.89 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000081.994.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (313134 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 5260.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (154584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (154584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (154584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (154584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1623.13 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (154584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (154584 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 401.92 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (154584 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2411.51 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000161.995.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (154584 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 # Mc/sec: 3253.99 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (52818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (52818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 554.59 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (52818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (52818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (52818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 887.34 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (52818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.01s 00:00:00.02 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (52818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 2223.64 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000401.996.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (52818 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (51646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 805.68 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (51646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 867.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (51646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 206.58 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (51646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (51646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 134.28 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (51646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1817.94 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (51646 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 2174.30 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000421.997.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (51646 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/CyaG.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.CyaG.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: CyaG [M=105] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (105 nodes) Target sequences: 6 (103110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 1082.65 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF05147.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.PF05147.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LANC_like [M=352] Accession: PF05147.15 Description: Lanthionine synthetase C-like protein Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (352 nodes) Target sequences: 6 (103110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 3629.47 // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF01944.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.PF01944.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: SpoIIM [M=156] Accession: PF01944.19 Description: Stage II sporulation protein M Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (156 nodes) Target sequences: 6 (103110 residues searched) Passed MSV filter: 1 (0.166667); expected 0.1 (0.02) Passed bias filter: 1 (0.166667); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 1608.52 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/TIGR04195.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.TIGR04195.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: TIGR04195 [M=421] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (421 nodes) Target sequences: 6 (103110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF02794.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.PF02794.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: HlyC [M=127] Accession: PF02794.18 Description: RTX toxin acyltransferase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (127 nodes) Target sequences: 6 (103110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/LinL.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.LinL.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: LinL [M=26] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (26 nodes) Target sequences: 6 (103110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.01s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok] Incorrect number of command line arguments. Usage: hmmsearch [options] where most common options are: -h : show brief help on version and usage To see more help on available options, do /data/pg-molgen/software/bagel4/tools/hmmsearch/binaries/hmmsearch -h # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/labKC.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.labKC.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: labKC [M=40] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (40 nodes) Target sequences: 6 (103110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.01 # Mc/sec: 412.44 // [ok] # hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /data/pg-molgen/software/bagel4_2022/db_hmm/PF00881.hmm # target sequence database: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.six_frames.fna # per-dom hits tabular output: /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Odoribacteraceae//Odoribacteraceae.result/NZ_QRPV010000261.998.PF00881.domtblout # show alignments in output: no # domain reporting threshold: score >= 25 # number of worker threads: 8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Nitroreductase [M=168] Accession: PF00881.26 Description: Nitroreductase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- [No hits detected that satisfy reporting thresholds] Domain annotation for each sequence: [No targets detected that satisfy reporting thresholds] Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (168 nodes) Target sequences: 6 (103110 residues searched) Passed MSV filter: 0 (0); expected 0.1 (0.02) Passed bias filter: 0 (0); expected 0.1 (0.02) Passed Vit filter: 0 (0); expected 0.0 (0.001) Passed Fwd filter: 0 (0); expected 0.0 (1e-05) Initial search space (Z): 6 [actual number of targets] Domain search space (domZ): 0 [number of targets reported over threshold] # CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.00 # Mc/sec: inf // [ok]